Spaces:
Running
on
Zero
Running
on
Zero
Commit
·
9ecae58
1
Parent(s):
7a2ca4b
Updated app.py
Browse files
app.py
CHANGED
@@ -37,6 +37,9 @@ def run_nnunet_predict(nifti_file):
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# Debugging: List files in the /tmp/input directory
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print("Files in /tmp/input:")
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print(os.listdir(INPUT_DIR))
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# Set environment variables for nnUNet
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os.environ["nnUNet_results"] = MODEL_DIR
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@@ -48,7 +51,8 @@ def run_nnunet_predict(nifti_file):
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"-o", OUTPUT_DIR,
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"-d", "004", # Dataset ID
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"-c", "3d_fullres", # Configuration
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-
"-tr", "nnUNetTrainer_8000epochs",
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]
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try:
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subprocess.run(command, check=True)
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# Debugging: List files in the /tmp/input directory
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print("Files in /tmp/input:")
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print(os.listdir(INPUT_DIR))
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+
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print("Files in /tmp/output:")
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print(os.listdir(OUTPUT_DIR))
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# Set environment variables for nnUNet
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os.environ["nnUNet_results"] = MODEL_DIR
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"-o", OUTPUT_DIR,
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"-d", "004", # Dataset ID
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"-c", "3d_fullres", # Configuration
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"-tr", "nnUNetTrainer_8000epochs",
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"--device", "cpu",
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]
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try:
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subprocess.run(command, check=True)
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