FrancescoLR commited on
Commit
c2107b1
·
1 Parent(s): c32670e

Updated app.py

Browse files
Files changed (1) hide show
  1. app.py +3 -5
app.py CHANGED
@@ -37,9 +37,6 @@ def run_nnunet_predict(nifti_file):
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  # Debugging: List files in the /tmp/input directory
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  print("Files in /tmp/input:")
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  print(os.listdir(INPUT_DIR))
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-
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- print("Files in /tmp/output:")
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- print(os.listdir(OUTPUT_DIR))
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  # Set environment variables for nnUNet
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  os.environ["nnUNet_results"] = MODEL_DIR
@@ -51,9 +48,10 @@ def run_nnunet_predict(nifti_file):
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  "-o", OUTPUT_DIR,
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  "-d", "004", # Dataset ID
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  "-c", "3d_fullres", # Configuration
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- "-tr", "nnUNetTrainer_8000epochs",
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- "-device", "cpu",
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  ]
 
 
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  try:
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  subprocess.run(command, check=True)
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  # Get the output file
 
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  # Debugging: List files in the /tmp/input directory
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  print("Files in /tmp/input:")
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  print(os.listdir(INPUT_DIR))
 
 
 
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  # Set environment variables for nnUNet
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  os.environ["nnUNet_results"] = MODEL_DIR
 
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  "-o", OUTPUT_DIR,
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  "-d", "004", # Dataset ID
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  "-c", "3d_fullres", # Configuration
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+ "-tr", "nnUNetTrainer_8000epochs",
 
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  ]
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+ print("Files in /tmp/output:")
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+ print(os.listdir(OUTPUT_DIR))
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  try:
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  subprocess.run(command, check=True)
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  # Get the output file