protein_properties / requirements.txt
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update
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-f https://download.pytorch.org/whl/cpu/torch_stable.html
-f https://data.pyg.org/whl/torch-1.12.1+cpu.html
# pip==20.2.4
torch==1.12.1
torch-scatter
torch-spline-conv
torch-sparse
torch-geometric
torchvision==0.13.1
torchaudio==0.12.1
gt4sd>=1.4.2
diffusers==0.6.0
molgx>=0.22.0a1
molecule_generation
nglview
PyTDC==0.3.7
gradio==4.36.1
markdown-it-py>=2.1.0
mols2grid==1.1.1
numpy==1.23.5
pandas>=1.0.0,<2.0.0
httpcore==0.15
pydantic>=2.0.0
pydantic-settings>=2.0.0
torchmetrics==0.11.4
networkx==3.0
keras==2.10.0
pytorch-lightning==1.7.7
scipy>=1.0.0
transformers
tensorflow==2.11
terminator @ git+https://github.com/IBM/regression-transformer@gt4sd
guacamol_baselines @ git+https://github.com/GT4SD/[email protected]
moses @ git+https://github.com/GT4SD/[email protected]
paccmann_chemistry @ git+https://github.com/PaccMann/[email protected]
paccmann_generator @ git+https://github.com/PaccMann/[email protected]
paccmann_gp @ git+https://github.com/PaccMann/[email protected]
paccmann_omics @ git+https://github.com/PaccMann/[email protected]
paccmann_predictor @ git+https://github.com/PaccMann/paccmann_predictor@sarscov2
reinvent_models @ git+https://github.com/GT4SD/[email protected]
h11==0.13.0
huggingface-hub<0.26.0