fatmacankara commited on
Commit
2aae16b
·
1 Parent(s): d14545c

Update code/add_structure.py

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Files changed (1) hide show
  1. code/add_structure.py +3 -2
code/add_structure.py CHANGED
@@ -156,10 +156,11 @@ def get_pdb_ids(protein_id):
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  try:
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  request = IdMappingClient.submit(
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  source="UniProtKB_AC-ID", dest="PDB", ids={protein_id})
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-
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- time.sleep(2.0)
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  pdb_list = list(request.each_result())
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  return [i['to'] for i in pdb_list]
 
 
 
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  except requests.exceptions.HTTPError:
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  get_pdb_ids_2(protein_id)
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  except KeyError:
 
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  try:
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  request = IdMappingClient.submit(
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  source="UniProtKB_AC-ID", dest="PDB", ids={protein_id})
 
 
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  pdb_list = list(request.each_result())
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  return [i['to'] for i in pdb_list]
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+ except IdMappingError:
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+ print('HERE')
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+ get_pdb_ids_2(protein_id)
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  except requests.exceptions.HTTPError:
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  get_pdb_ids_2(protein_id)
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  except KeyError: