fatmacankara commited on
Commit
34b153b
·
1 Parent(s): be5532f

Update code/alphafold_featureVector.py

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Files changed (1) hide show
  1. code/alphafold_featureVector.py +3 -3
code/alphafold_featureVector.py CHANGED
@@ -739,8 +739,8 @@ def alphafold(input_set, mode, impute):
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  st.write('readlines', file)
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  for k in file:
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  st.write('HERE')
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- st.write('xx', k.strip()[10:13])
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- st.write('sasa_pos', sasa_pos)
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  if str(k.strip()[10:13]) == str(sasa_pos):
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  st.write('WHY ')
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  st.write(str(k[4:7].strip()))
@@ -758,7 +758,7 @@ def alphafold(input_set, mode, impute):
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  sasa = 'nan'
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  #sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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  # path_to_output_files, file_type='gzip')
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-
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  if sasa_val != None:
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  uniprot_matched.at[i, 'sasa'] = sasa_val
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  else:
 
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  st.write('readlines', file)
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  for k in file:
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  st.write('HERE')
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+ st.write('xx', 'sasa_pos')
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+ st.write(k.strip()[10:13], sasa_pos, k.strip()[10:13]== sasa_pos)
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  if str(k.strip()[10:13]) == str(sasa_pos):
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  st.write('WHY ')
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  st.write(str(k[4:7].strip()))
 
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  sasa = 'nan'
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  #sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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  # path_to_output_files, file_type='gzip')
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+ st.write('I am here', sasa_val)
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  if sasa_val != None:
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  uniprot_matched.at[i, 'sasa'] = sasa_val
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  else: