fatmacankara commited on
Commit
5fff1b6
·
1 Parent(s): b33353a

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +5 -7
code/pdb_featureVector.py CHANGED
@@ -171,10 +171,7 @@ def pdb(input_set, mode, impute):
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  data_size = len(data.drop_duplicates(['datapoint']))
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  not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
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  uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
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- st.write(uniprot_matched)
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- st.write(not_match_in_uniprot)
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- if (len(uniprot_matched) == 0) & (len(not_match_in_uniprot) == 0):
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- st.write('Please check the input aminoacid at the selected position.')
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  data = None
@@ -493,9 +490,10 @@ def pdb(input_set, mode, impute):
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  print('--PDB structures not found for %d datapoints.' % len(no_pdb.drop_duplicates(['datapoint'])))
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  print('--%d will be searched in Swiss-Model database.\n' % (
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  len(yes_pdb_no_match.drop_duplicates(['datapoint'])) + len(no_pdb.drop_duplicates(['datapoint']))))
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- st.write('dfM')
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- st.write(dfM)
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- st.write(dfNM)
 
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  dfM = None
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  dfNM = None
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  aligned_nm = None
 
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  data_size = len(data.drop_duplicates(['datapoint']))
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  not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
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  uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
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+
 
 
 
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  data = None
 
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  print('--PDB structures not found for %d datapoints.' % len(no_pdb.drop_duplicates(['datapoint'])))
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  print('--%d will be searched in Swiss-Model database.\n' % (
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  len(yes_pdb_no_match.drop_duplicates(['datapoint'])) + len(no_pdb.drop_duplicates(['datapoint']))))
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+
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+ if (len(dfM) == 0) & (len(dfNM) == 0):
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+ st.write('Please check the input aminoacid at the selected position.')
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+
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  dfM = None
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  dfNM = None
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  aligned_nm = None