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655ea6b
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Parent(s):
9766a26
Update code/add_alignment.py
Browse files- code/add_alignment.py +3 -0
code/add_alignment.py
CHANGED
@@ -8,6 +8,9 @@ from Bio.pairwise2 import format_alignment
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def do_alignment(identifier, uniprotSequence, pdbSequence, alignment_path):
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print(f'Aligning Datapoint: {identifier}')
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if len(pdbSequence) >= 1:
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#f = open(Path(alignment_path / f'{identifier}_alignment.txt'),"w")
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aligner.mode = 'local'
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def do_alignment(identifier, uniprotSequence, pdbSequence, alignment_path):
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print(f'Aligning Datapoint: {identifier}')
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print(pdbSequence)
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print('uniprot Seq')
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print(uniprotSequence)
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if len(pdbSequence) >= 1:
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#f = open(Path(alignment_path / f'{identifier}_alignment.txt'),"w")
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aligner.mode = 'local'
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