Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -223,9 +223,10 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
         if source == 'PDB':
             # Step 1: Fetch the PDB file
             pdb_url = f"https://files.rcsb.org/download/{pdbID}.pdb"
+            print(pdb_url)
             response = requests.get(pdb_url)
             response.raise_for_status()  # Check for a successful response
-            
+            print(response)
             # Step 2: Parse the PDB file from memory
             atoms = [i for i in response.text.split('\n') if i.startswith('ATOM')]
             atoms = [i.split() for i in atoms]
@@ -233,6 +234,7 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
             atomSequence = ''.join([three_to_one(i[3]) for i in atoms])
             coords = [[i[6] ,i[7] ,i[8]] for i in atoms]
             resnums_for_sasa = [i[5] for i in atoms]
+            print(atoms)
         elif source == 'SWISSMODEL':
             atomSequence = ''
             coords = []