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6877db6
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Parent(s):
d3aafa8
Update ASCARIS.py
Browse files- ASCARIS.py +31 -4
ASCARIS.py
CHANGED
@@ -11,10 +11,37 @@ import argparse
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from st_aggrid import AgGrid, GridOptionsBuilder, JsCode,GridUpdateMode
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import base64
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showWarningOnDirectExecution = False
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def convert_df(df):
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return df.to_csv(index=False).encode('utf-8')
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from st_aggrid import AgGrid, GridOptionsBuilder, JsCode,GridUpdateMode
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import base64
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showWarningOnDirectExecution = False
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from datasets import Dataset, concatenate_datasets
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MAX_SAMPLES_IN_MEMORY = 1000
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samples_in_dset = 0
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dset = Dataset.from_dict({"col1": [], "col2": []}) # empty dataset
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path_to_save_dir = "HUBioData/input_files"
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num_chunks = 0
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for example_dict in custom_example_dict_streamer("HUBioData/AlphafoldStructures"):
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dset = dset.add_item(example_dict)
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samples_in_dset += 1
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if samples_in_dset == MAX_SAMPLES_IN_MEMORY:
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samples_in_dset = 0
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dset.save_to_disk(f"{path_to_save_dir}{num_chunks}")
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num_chunks =+ 1
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dset = Dataset.from_dict({"col1": [], "col2": []}) # empty dataset
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if samples_in_dset > 0:
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dset.save_to_disk(f"{path_to_save_dir}{num_chunks}")
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num_chunks =+ 1
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loaded_dsets = [] # memory-mapped
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for chunk_num in range(num_chunks):
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dset = Dataset.load_from_disk(f"{path_to_save_dir}{chunk_num}")
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loaded_dsets.append(dset)
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final_dset = concatenate_datasets(dset)
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st.write('FİNAL DSET')
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st.write(final_dset)
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def convert_df(df):
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return df.to_csv(index=False).encode('utf-8')
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