fatmacankara commited on
Commit
6a37be7
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1 Parent(s): 37ca959

Update code/modbaseModelAdd.py

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  1. code/modbaseModelAdd.py +5 -0
code/modbaseModelAdd.py CHANGED
@@ -68,6 +68,11 @@ def addModbaseModels(dataframe, path_to_input_files, path_to_output_files):
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  include_hetatms=True,
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  outdir=None, force_rerun=False, file_type='pdb')
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  filename = Path(path_to_output_files / 'freesasa_files' / f'{model_id.lower()}.txt')
 
 
 
 
 
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  dataframe.loc[i, 'sasa'] = sasa(protein, varPos, wt, 1, filename, path_to_output_files, file_type='pdb')
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  with open(path_to_output_files / 'modbase_structures_individual'/ f'{model_id}.txt', encoding="utf8") as m:
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  include_hetatms=True,
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  outdir=None, force_rerun=False, file_type='pdb')
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  filename = Path(path_to_output_files / 'freesasa_files' / f'{model_id.lower()}.txt')
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+ st.write('filename', filename)
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+ st.write('varPos', varPos)
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+ st.write('wt', wt)
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+ st.write('protein', protein)
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+ st.write('path_to_output_files', path_to_output_files)
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  dataframe.loc[i, 'sasa'] = sasa(protein, varPos, wt, 1, filename, path_to_output_files, file_type='pdb')
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  with open(path_to_output_files / 'modbase_structures_individual'/ f'{model_id}.txt', encoding="utf8") as m:
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