fatmacankara commited on
Commit
6c5efb0
·
1 Parent(s): 222ee5a

Update code/pdb_featureVector.py

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  1. code/pdb_featureVector.py +1 -9
code/pdb_featureVector.py CHANGED
@@ -1396,15 +1396,7 @@ def pdb(input_set, mode, impute):
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  uniprotID = data.at[i, 'uniprotID']
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  pdbID = data.at[i, 'pdbID']
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- st.write('pdbSequence',pdbSequence)
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- st.write('source',source)
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- st.write('chain',chain)
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- st.write('uniprotID',uniprotID)
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- st.write('pdbID',pdbID)
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- st.write('Path(path_to_output_files / 3D_alignment)', Path(path_to_output_files / '3D_alignment'))
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- st.write('mode', mode, mode == 1)
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- st.write('pdb_path', pdb_path)
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- st.write('f ', Path(path_to_output_files / '3D_alignment'))
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  alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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  mutPos = data.at[i, 'mutationPositionOnPDB']
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  try:
 
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  uniprotID = data.at[i, 'uniprotID']
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  pdbID = data.at[i, 'pdbID']
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+
 
 
 
 
 
 
 
 
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  alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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  mutPos = data.at[i, 'mutationPositionOnPDB']
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  try: