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6c5efb0
1
Parent(s):
222ee5a
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -1396,15 +1396,7 @@ def pdb(input_set, mode, impute):
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uniprotID = data.at[i, 'uniprotID']
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pdbID = data.at[i, 'pdbID']
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st.write('source',source)
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st.write('chain',chain)
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st.write('uniprotID',uniprotID)
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st.write('pdbID',pdbID)
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st.write('Path(path_to_output_files / 3D_alignment)', Path(path_to_output_files / '3D_alignment'))
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st.write('mode', mode, mode == 1)
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st.write('pdb_path', pdb_path)
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st.write('f ', Path(path_to_output_files / '3D_alignment'))
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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uniprotID = data.at[i, 'uniprotID']
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pdbID = data.at[i, 'pdbID']
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+
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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