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6f54921
1
Parent(s):
703f8ce
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -1394,7 +1394,12 @@ def pdb(input_set, mode, impute):
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pdbID = data.at[i, 'pdbID']
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print('Das ist pdb seq')
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print(pdbSequence)
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-
print(uniprotID
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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pdbID = data.at[i, 'pdbID']
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print('Das ist pdb seq')
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print(pdbSequence)
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print(uniprotID)
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print(pdb_path)
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print(source)
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print(chain)
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print(pdbID)
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print(mode)
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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