fatmacankara commited on
Commit
934958b
·
1 Parent(s): 9311c3a

Update code/alphafold_featureVector.py

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  1. code/alphafold_featureVector.py +3 -0
code/alphafold_featureVector.py CHANGED
@@ -120,10 +120,13 @@ def alphafold(input_set, mode, impute):
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  print('Feature vectore generation terminated. Please enter a query or check your input format.')
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  else:
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  data = add_uniprot_sequence(data)
 
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  match = data[(data.wt_sequence_match == 'm')]
 
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  org_len = len(match)
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  iso = data[(data.wt_sequence_match == 'i')]
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  noMatch = data[(data.wt_sequence_match != 'm') & (data.wt_sequence_match != 'i')]
 
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  if len(noMatch) == len(data) :
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  print('>> Aminoacid at the position could not be mapped to canonical or isoform sequence. Please check the input amino acid.')
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  print('\n')
 
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  print('Feature vectore generation terminated. Please enter a query or check your input format.')
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  else:
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  data = add_uniprot_sequence(data)
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+ st.write(data)
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  match = data[(data.wt_sequence_match == 'm')]
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+ st.write(match)
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  org_len = len(match)
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  iso = data[(data.wt_sequence_match == 'i')]
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  noMatch = data[(data.wt_sequence_match != 'm') & (data.wt_sequence_match != 'i')]
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+ st.write(noMatch)
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  if len(noMatch) == len(data) :
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  print('>> Aminoacid at the position could not be mapped to canonical or isoform sequence. Please check the input amino acid.')
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  print('\n')