fatmacankara commited on
Commit
9f158f0
·
1 Parent(s): baf3e1e

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +4 -2
code/pdb_featureVector.py CHANGED
@@ -238,10 +238,12 @@ def pdb(input_set, mode, impute):
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  file = pdbl.retrieve_pdb_file(search, pdir=path_pdb, file_format="pdb")
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  st.write('file: ', file)
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  existing_pdb = list(Path(path_to_output_files / 'pdb_structures').glob("*"))
 
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  st.write('after download:', existing_pdb)
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  st.write(Path(path_to_output_files / 'pdb_structures') , path_pdb)
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- existing_pdb = list(path_pdb.glob("*"))
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- st.write('after download:', existing_pdb)
 
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  resolution_method = parser.get_structure(search, file)
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  for record in SeqIO.parse(file, "pdb-seqres"):
 
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  file = pdbl.retrieve_pdb_file(search, pdir=path_pdb, file_format="pdb")
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  st.write('file: ', file)
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  existing_pdb = list(Path(path_to_output_files / 'pdb_structures').glob("*"))
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+
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  st.write('after download:', existing_pdb)
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  st.write(Path(path_to_output_files / 'pdb_structures') , path_pdb)
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+
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+ existing_pdb = list(glob.glob(f"{path_pdb}/*"))
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+ st.write('after download 2:', existing_pdb)
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  resolution_method = parser.get_structure(search, file)
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  for record in SeqIO.parse(file, "pdb-seqres"):