fatmacankara commited on
Commit
dbaf398
·
1 Parent(s): e3f067d

Update code/alphafold_featureVector.py

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Files changed (1) hide show
  1. code/alphafold_featureVector.py +0 -4
code/alphafold_featureVector.py CHANGED
@@ -706,7 +706,6 @@ def alphafold(input_set, mode, impute):
706
  fname = list(filter(None, str(filename).split('.')))[0].split('/')[-1].split('-')[1].upper()
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  except IndexError:
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- st.write('IndexError')
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  fname = ''
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  if uniprotID == fname:
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  files = open(filename, 'r')
@@ -722,17 +721,14 @@ def alphafold(input_set, mode, impute):
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  sasa_val = 'nan'
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  else:
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  sasa = 'nan'
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- st.write('lxf')
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  #sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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  # path_to_output_files, file_type='gzip')
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- st.write('I am here', sasa_val)
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  if sasa_val != None:
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  uniprot_matched.at[i, 'sasa'] = sasa_val
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  else:
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  coordMut = 'nan'
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  sasa_val = 'nan'
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  uniprot_matched.at[i, 'sasa'] = sasa_val
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- st.write('IDK')
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  domainPositionOnPDB_list = list(
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  range(int(uniprot_matched.at[i, 'domStart']), int(uniprot_matched.at[i, 'domEnd'])))
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  domain_distances = []
 
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  fname = list(filter(None, str(filename).split('.')))[0].split('/')[-1].split('-')[1].upper()
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  except IndexError:
708
 
 
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  fname = ''
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  if uniprotID == fname:
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  files = open(filename, 'r')
 
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  sasa_val = 'nan'
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  else:
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  sasa = 'nan'
 
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  #sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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  # path_to_output_files, file_type='gzip')
 
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  if sasa_val != None:
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  uniprot_matched.at[i, 'sasa'] = sasa_val
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  else:
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  coordMut = 'nan'
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  sasa_val = 'nan'
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  uniprot_matched.at[i, 'sasa'] = sasa_val
 
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  domainPositionOnPDB_list = list(
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  range(int(uniprot_matched.at[i, 'domStart']), int(uniprot_matched.at[i, 'domEnd'])))
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  domain_distances = []