fatmacankara commited on
Commit
e42b8dd
·
1 Parent(s): f9741db

Update code/pdb_featureVector.py

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  1. code/pdb_featureVector.py +3 -0
code/pdb_featureVector.py CHANGED
@@ -96,6 +96,7 @@ def pdb(input_set, mode, impute):
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  data.domEnd = data.domEnd.replace({'nan': '-1'})
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  data.distance = data.distance.replace({'nan': '-1'})
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  st.write('1')
 
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  """
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  STEP 4
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  Retrieve canonical and isoform UniProt sequences.
@@ -169,6 +170,8 @@ def pdb(input_set, mode, impute):
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  data_size = len(data.drop_duplicates(['datapoint']))
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  not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
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  uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
 
 
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  data = None
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  print('You have %d data points that failed to match a UniProt Sequence\nProceeding with %d remaining...\n'
 
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  data.domEnd = data.domEnd.replace({'nan': '-1'})
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  data.distance = data.distance.replace({'nan': '-1'})
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  st.write('1')
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+ st.write(data)
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  """
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  STEP 4
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  Retrieve canonical and isoform UniProt sequences.
 
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  data_size = len(data.drop_duplicates(['datapoint']))
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  not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
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  uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
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+ st.write('DAFSDSD')
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+ st.write(data)
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  data = None
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  print('You have %d data points that failed to match a UniProt Sequence\nProceeding with %d remaining...\n'