Spaces:
Sleeping
Sleeping
Commit
·
e42b8dd
1
Parent(s):
f9741db
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -96,6 +96,7 @@ def pdb(input_set, mode, impute):
|
|
96 |
data.domEnd = data.domEnd.replace({'nan': '-1'})
|
97 |
data.distance = data.distance.replace({'nan': '-1'})
|
98 |
st.write('1')
|
|
|
99 |
"""
|
100 |
STEP 4
|
101 |
Retrieve canonical and isoform UniProt sequences.
|
@@ -169,6 +170,8 @@ def pdb(input_set, mode, impute):
|
|
169 |
data_size = len(data.drop_duplicates(['datapoint']))
|
170 |
not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
|
171 |
uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
|
|
|
|
|
172 |
data = None
|
173 |
|
174 |
print('You have %d data points that failed to match a UniProt Sequence\nProceeding with %d remaining...\n'
|
|
|
96 |
data.domEnd = data.domEnd.replace({'nan': '-1'})
|
97 |
data.distance = data.distance.replace({'nan': '-1'})
|
98 |
st.write('1')
|
99 |
+
st.write(data)
|
100 |
"""
|
101 |
STEP 4
|
102 |
Retrieve canonical and isoform UniProt sequences.
|
|
|
170 |
data_size = len(data.drop_duplicates(['datapoint']))
|
171 |
not_match_in_uniprot = data[(data.uniprotSequence == 'nan') | (data.wt_sequence_match == 'nan')]
|
172 |
uniprot_matched = data[(data.uniprotSequence != 'nan') & (data.wt_sequence_match != 'nan')]
|
173 |
+
st.write('DAFSDSD')
|
174 |
+
st.write(data)
|
175 |
data = None
|
176 |
|
177 |
print('You have %d data points that failed to match a UniProt Sequence\nProceeding with %d remaining...\n'
|