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e507403
1
Parent(s):
9e930bc
Update pdb_featureVector.py
Browse files- pdb_featureVector.py +1 -5
pdb_featureVector.py
CHANGED
@@ -432,14 +432,10 @@ def pdb(input_set, mode, impute):
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st.write(dfM)
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st.write('dfNM')
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st.write(dfNM)
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st.write(annotation_list)
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print('Aligning sequences...\n')
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aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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st.write(aligned_m)
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st.write('aligned_nm')
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st.write(aligned_nm)
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# When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
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for i in aligned_m.index:
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if aligned_m.at[i, 'pdbSequence'] == 'nan':
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st.write(dfM)
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st.write('dfNM')
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st.write(dfNM)
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print('Aligning sequences...\n')
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aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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+
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# When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
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for i in aligned_m.index:
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if aligned_m.at[i, 'pdbSequence'] == 'nan':
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