fatmacankara commited on
Commit
e507403
·
1 Parent(s): 9e930bc

Update pdb_featureVector.py

Browse files
Files changed (1) hide show
  1. pdb_featureVector.py +1 -5
pdb_featureVector.py CHANGED
@@ -432,14 +432,10 @@ def pdb(input_set, mode, impute):
432
  st.write(dfM)
433
  st.write('dfNM')
434
  st.write(dfNM)
435
- st.write(annotation_list)
436
  print('Aligning sequences...\n')
437
  aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
438
  aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
439
- st.write('aligned_m')
440
- st.write(aligned_m)
441
- st.write('aligned_nm')
442
- st.write(aligned_nm)
443
  # When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
444
  for i in aligned_m.index:
445
  if aligned_m.at[i, 'pdbSequence'] == 'nan':
 
432
  st.write(dfM)
433
  st.write('dfNM')
434
  st.write(dfNM)
 
435
  print('Aligning sequences...\n')
436
  aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
437
  aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
438
+
 
 
 
439
  # When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
440
  for i in aligned_m.index:
441
  if aligned_m.at[i, 'pdbSequence'] == 'nan':