fatmacankara commited on
Commit
f37d05e
·
1 Parent(s): 06faac0

Update code/add_3Dalignment.py

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Files changed (1) hide show
  1. code/add_3Dalignment.py +4 -0
code/add_3Dalignment.py CHANGED
@@ -275,10 +275,13 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
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  return alignments, coords, resnums_for_sasa
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  elif mode==2:
 
 
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  atomSequence = ''
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  coords = []
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  resnums_for_sasa = []
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  if file_format == 'txt':
 
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  with open(name, encoding="utf8") as f:
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  for line in f.readlines():
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  if line[0:4].strip() == 'ATOM' and line[13:15].strip() == 'CA':
@@ -290,6 +293,7 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
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  coords.append([line[31:38].strip(), line[39:46].strip(), line[47:54].strip()])
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  resnums_for_sasa.append(line[22:26].strip())
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  elif file_format == 'gzip':
 
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  with gzip.open(pdb_path, mode='rb') as f:
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  for line in f:
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  line = line.decode()
 
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  return alignments, coords, resnums_for_sasa
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  elif mode==2:
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+ st.write('Hello I am in 3Dalignment')
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+
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  atomSequence = ''
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  coords = []
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  resnums_for_sasa = []
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  if file_format == 'txt':
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+ st.write('Hello I am in 3Dalignment TXT')
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  with open(name, encoding="utf8") as f:
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  for line in f.readlines():
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  if line[0:4].strip() == 'ATOM' and line[13:15].strip() == 'CA':
 
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  coords.append([line[31:38].strip(), line[39:46].strip(), line[47:54].strip()])
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  resnums_for_sasa.append(line[22:26].strip())
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  elif file_format == 'gzip':
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+ st.write('Hello I am in 3Dalignment GZIP')
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  with gzip.open(pdb_path, mode='rb') as f:
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  for line in f:
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  line = line.decode()