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Update trainer.py
Browse files- trainer.py +2 -2
trainer.py
CHANGED
@@ -734,9 +734,9 @@ class Trainer(object):
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if self.submodel == "NoTarget":
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drug_smiles = [line for line in open("data/
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else:
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drug_smiles = [line for line in open("data/
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drug_mols = [Chem.MolFromSmiles(smi) for smi in drug_smiles]
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drug_scaf = [MurckoScaffold.GetScaffoldForMol(x) for x in drug_mols]
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if self.submodel == "NoTarget":
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+
drug_smiles = [line for line in open("data/chembl_train.smi", 'r').read().splitlines()]
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else:
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drug_smiles = [line for line in open("data/akt_train.smi", 'r').read().splitlines()]
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drug_mols = [Chem.MolFromSmiles(smi) for smi in drug_smiles]
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drug_scaf = [MurckoScaffold.GetScaffoldForMol(x) for x in drug_mols]
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