osbm commited on
Commit
756ed92
·
1 Parent(s): f53e2c9

Update app.py

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Files changed (1) hide show
  1. app.py +50 -2
app.py CHANGED
@@ -8,9 +8,57 @@ class DrugGENConfig:
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  act='relu'
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  z_dim=16
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  max_atom=45
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-
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-
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  with st.spinner('Setting up the trainer class...'):
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  trainer = Trainer(DrugGENConfig())
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  act='relu'
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  z_dim=16
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  max_atom=45
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+ lambda_gp=1
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+ dim=128
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+ depth=1
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+ heads=8
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+ dec_depth=1
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+ dec_heads=8
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+ dec_dim=128
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+ mlp_ratio=3
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+ warm_up_steps=0
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+ dis_select='mlp'
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+ init_type='normal'
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+ batch_size=128
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+ epoch=50
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+ g_lr=0.00001
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+ d_lr=0.00001
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+ g2_lr=0.00001
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+ d2_lr0.00001
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+ dropout=0.
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+ dec_dropout=0.
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+ n_critic=1
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+ beta1=0.9
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+ beta2=0.999
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+ resume_iters=None
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+ clipping_value=2
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+ features=False
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+ test_iters=10_000
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+ num_test_epoch=30_000
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+ inference_sample_num=1000
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+ num_workers=1
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+ mode="inference"
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+ inference_iterations=100
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+ inf_batch_size=1
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+ protein_data_dir='DrugGEN/data/akt'
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+ drug_index='DrugGEN/data/drug_smiles.index'
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+ drug_data_dir='DrugGEN/data/akt'
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+ mol_data_dir='DrugGEN/data'
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+ log_dir='DrugGEN/experiments/logs'
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+ model_save_dir='DrugGEN/experiments/models'
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+ inference_model=""
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+ sample_dir='DrugGEN/experiments/samples'
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+ result_dir="DrugGEN/experiments/tboard_output"
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+ dataset_file="chembl45_train.pt"
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+ drug_dataset_file="akt_train.pt"
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+ raw_file='DrugGEN/data/chembl_train.smi'
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+ drug_raw_file="DrugGEN/data/akt_train.smi"
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+ inf_dataset_file="chembl45_test.pt"
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+ inf_drug_dataset_file='akt_test.pt'
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+ inf_raw_file='DrugGEN/data/chembl_test.smi'
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+ inf_drug_raw_file="DrugGEN/data/akt_test.smi"
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+
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  with st.spinner('Setting up the trainer class...'):
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  trainer = Trainer(DrugGENConfig())
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