Spaces:
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Sleeping
Erva Ulusoy
commited on
Commit
·
b9adca5
1
Parent(s):
301ba09
updated configs
Browse files
data/models/prothgt-config-biological-process.yaml
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num_heads:
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desc: null
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value: 8
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num_layers:
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desc: null
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value: 2
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num_neighbors:
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desc: null
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value:
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- 256
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mlp_dropout:
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desc: null
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value: 0.4
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mlp_lr:
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desc: null
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value: 0.005
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mlp_wd:
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desc: null
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value: 0.0001
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neg_sample_ratio:
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desc: null
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value: 100
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pos_weight:
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desc: null
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value: 100
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{
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"lr": 0.001,
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"wd": 5e-5,
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"epochs": 100,
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"tr_batch_size": 1024,
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"hidden_channels": [128, [256, 128, 64, 1]],
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"num_heads": 8,
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"num_layers": 2,
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"num_neighbors": [256],
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"mlp_dropout" : 0.4,
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"mlp_lr": 0.005,
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"mlp_wd": 0.0001,
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"neg_sample_ratio": 100,
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"pos_weight": 100,
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}
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data/models/prothgt-config-cellular-component.yaml
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@@ -1,45 +1,17 @@
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num_heads:
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desc: null
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value: 16
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num_layers:
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desc: null
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value: 3
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num_neighbors:
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desc: null
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value:
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mlp_dropout:
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desc: null
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value: 0.2
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mlp_lr:
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desc: null
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value: 0.01
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mlp_wd:
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desc: null
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value: 0
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neg_sample_ratio:
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desc: null
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value: 100
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pos_weight:
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desc: null
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value: 100
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{
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"lr": 0.005,
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"wd": 0,
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"epochs": 100,
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"tr_batch_size": 2048,
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"hidden_channels": [32, [64, 32, 16, 1]],
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"num_heads": 16,
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"num_layers": 3,
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"num_neighbors": [256],
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"mlp_dropout" : 0.2,
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"mlp_lr": 0.01,
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"mlp_wd": 0,
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"neg_sample_ratio": 100,
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"pos_weight": 100,
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}
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data/models/prothgt-config-molecular-function.yaml
CHANGED
@@ -1,46 +1,17 @@
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num_heads:
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desc: null
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value: 2
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num_layers:
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desc: null
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value: 2
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num_neighbors:
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value:
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mlp_dropout:
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desc: null
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value: 0.4
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mlp_lr:
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desc: null
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value: 0.01
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mlp_wd:
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desc: null
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value: 1.0e-05
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neg_sample_ratio:
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desc: null
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value: 100
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pos_weight:
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desc: null
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value: 100
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{
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"lr": 0.005,
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"wd": 0,
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"epochs": 100,
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"tr_batch_size": 512,
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"hidden_channels": [32, [64, 32, 16, 8, 1]],
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"num_heads": 2,
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"num_layers": 2,
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"num_neighbors": [32],
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"mlp_dropout" : 0.4,
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"mlp_lr": 0.01,
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"mlp_wd": 0.00001,
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"neg_sample_ratio": 100,
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"pos_weight": 100,
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}
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