Erva Ulusoy commited on
Commit
bf28cce
·
1 Parent(s): 2931689

try with latest pyg version

Browse files
Files changed (3) hide show
  1. requirements.txt +3 -3
  2. run_prothgt_app.py +2 -1
  3. setup.sh +0 -6
requirements.txt CHANGED
@@ -1,5 +1,5 @@
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  pandas
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- torch==1.12.1
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- # torch-sparse -f https://data.pyg.org/whl/torch-1.13.0+cpu.html
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- torch-geometric==2.2.0
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  gdown
 
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  pandas
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+ torch
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+ torch-sparse
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+ torch-geometric
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  gdown
run_prothgt_app.py CHANGED
@@ -18,7 +18,8 @@ class ProtHGT(torch.nn.Module):
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  self.convs = torch.nn.ModuleList()
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  for _ in range(num_layers):
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- conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads, group='sum')
 
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  self.convs.append(conv)
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  self.mlp = MLP(mlp_hidden_layers , dropout=mlp_dropout, norm=None)
 
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  self.convs = torch.nn.ModuleList()
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  for _ in range(num_layers):
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+ # conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads, group='sum')
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+ conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads)
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  self.convs.append(conv)
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  self.mlp = MLP(mlp_hidden_layers , dropout=mlp_dropout, norm=None)
setup.sh DELETED
@@ -1,6 +0,0 @@
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- #!/bin/bash
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- pip install torch==1.12.1
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- pip uninstall torch-scatter torch-sparse torch-geometric torch-cluster torch-geometric --y
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- # pip install torch-scatter -f https://data.pyg.org/whl/torch-1.12.0+cpu.html
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- pip install torch-sparse -f https://data.pyg.org/whl/torch-1.12.0+cpu.html
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- # pip install torch-cluster -f https://data.pyg.org/whl/torch-1.12.0+cpu.html