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Erva Ulusoy
commited on
Commit
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bf28cce
1
Parent(s):
2931689
try with latest pyg version
Browse files- requirements.txt +3 -3
- run_prothgt_app.py +2 -1
- setup.sh +0 -6
requirements.txt
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@@ -1,5 +1,5 @@
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pandas
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torch
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torch-geometric
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gdown
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pandas
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torch
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torch-sparse
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torch-geometric
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gdown
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run_prothgt_app.py
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@@ -18,7 +18,8 @@ class ProtHGT(torch.nn.Module):
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self.convs = torch.nn.ModuleList()
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for _ in range(num_layers):
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conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads, group='sum')
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self.convs.append(conv)
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self.mlp = MLP(mlp_hidden_layers , dropout=mlp_dropout, norm=None)
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self.convs = torch.nn.ModuleList()
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for _ in range(num_layers):
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# conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads, group='sum')
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conv = HGTConv(hidden_channels, hidden_channels, data.metadata(), num_heads)
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self.convs.append(conv)
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self.mlp = MLP(mlp_hidden_layers , dropout=mlp_dropout, norm=None)
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setup.sh
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#!/bin/bash
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pip install torch==1.12.1
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pip uninstall torch-scatter torch-sparse torch-geometric torch-cluster torch-geometric --y
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# pip install torch-scatter -f https://data.pyg.org/whl/torch-1.12.0+cpu.html
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pip install torch-sparse -f https://data.pyg.org/whl/torch-1.12.0+cpu.html
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# pip install torch-cluster -f https://data.pyg.org/whl/torch-1.12.0+cpu.html
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