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from pathlib import Path |
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import pytest |
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@pytest.fixture(scope="module") |
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def tmp_files(tmp_directory: Path, tmp_files: dict): |
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files = { |
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"invalid_template": tmp_directory / "template.txt", |
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"valid_template": tmp_directory / "template.cif", |
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"valid_template_2": tmp_directory / "template_2.cif", |
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"valid_template_3": tmp_directory / "7si2_chothia_CGF.cif", |
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"valid_template_4": tmp_directory / "7xd2_chothia_CGF.cif", |
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"invalid_msa": tmp_directory / "msa.txt", |
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"valid_msa_sto": tmp_directory / "msa.sto", |
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"valid_msa_a3m": tmp_directory / "msa.a3m", |
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"invalid_initial_guess": tmp_directory / "ig.txt", |
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"valid_initial_guess": tmp_directory / "ig.cif", |
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"invalid_templates_masks": tmp_directory / "ab_ag_masks_nok.txt", |
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"valid_batch_file_csv": tmp_directory / "batch_config.csv", |
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"valid_batch_file_json": tmp_directory / "batch_config.json", |
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"metadata_file": tmp_directory / "submission_metadata.json", |
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} |
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for path in files.values(): |
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path.touch() |
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tmp_files.update(files) |
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yield tmp_files |
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@pytest.fixture() |
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def valid_templates_masks(): |
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return Path(__file__).parent / "data/ab_ag_masks_ok.json" |
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