cursor unhinged
Browse files- folding_studio_demo/app.py +16 -17
folding_studio_demo/app.py
CHANGED
@@ -269,25 +269,24 @@ def model_comparison(api_key: str) -> None:
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def create_antibody_discovery_tab():
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gr.Markdown("# Accelerating Antibody Discovery: In-Silico and Experimental Insights")
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gr.Markdown("""
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- The antibody's light and heavy chain sequences
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- The antigen sequence
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The models
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are
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accelerating the drug discovery process.
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""")
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spr_data_with_scores = pd.read_csv("spr_af_scores_mapped.csv")
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spr_data_with_scores = spr_data_with_scores.rename(columns=SCORE_COLUMN_NAMES)
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def create_antibody_discovery_tab():
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gr.Markdown("# Accelerating Antibody Discovery: In-Silico and Experimental Insights")
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gr.Markdown("""
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Hey there! π Let's dive into how we're using AI to speed up antibody drug discovery by looking at how protein folding models stack up against real lab data.
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We've got this cool dataset that shows how well different antibodies stick to a specific target (we measure this as KD in nM). π§ͺ
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For each antibody-target pair, we've recorded:
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- The antibody's light and heavy chain sequences (think of them as the antibody's building blocks) π§¬
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- The target (antigen) sequence π―
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- How strongly they bind together in the lab (the KD value, lower means stronger binding) πͺ
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Here's where it gets interesting! We take these sequences and feed them into protein folding models
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that predict their 3D structures. The models tell us how confident they are about their predictions.
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By comparing these confidence scores with our lab results, we can figure out which model scores
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are actually good at predicting real binding strength! π―
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Why is this super exciting for drug discovery? π Once we know which computational scores to trust,
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we can use them to quickly check thousands of potential antibodies without having to test each one
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in the lab. It's like having a super-fast screening tool! We can then focus our lab work on testing
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just the most promising candidates. This means we can find effective antibody drugs way faster than
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before! π¬β¨
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""")
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spr_data_with_scores = pd.read_csv("spr_af_scores_mapped.csv")
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spr_data_with_scores = spr_data_with_scores.rename(columns=SCORE_COLUMN_NAMES)
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