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import tempfile | |
from io import BytesIO | |
import pytest | |
import networkx as nx | |
from networkx.utils import edges_equal, nodes_equal | |
class TestSparseGraph6: | |
def test_from_sparse6_bytes(self): | |
data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM" | |
G = nx.from_sparse6_bytes(data) | |
assert nodes_equal( | |
sorted(G.nodes()), | |
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17], | |
) | |
assert edges_equal( | |
G.edges(), | |
[ | |
(0, 1), | |
(0, 2), | |
(0, 3), | |
(1, 12), | |
(1, 14), | |
(2, 13), | |
(2, 15), | |
(3, 16), | |
(3, 17), | |
(4, 7), | |
(4, 9), | |
(4, 11), | |
(5, 6), | |
(5, 8), | |
(5, 9), | |
(6, 10), | |
(6, 11), | |
(7, 8), | |
(7, 10), | |
(8, 12), | |
(9, 15), | |
(10, 14), | |
(11, 13), | |
(12, 16), | |
(13, 17), | |
(14, 17), | |
(15, 16), | |
], | |
) | |
def test_from_bytes_multigraph_graph(self): | |
graph_data = b":An" | |
G = nx.from_sparse6_bytes(graph_data) | |
assert type(G) == nx.Graph | |
multigraph_data = b":Ab" | |
M = nx.from_sparse6_bytes(multigraph_data) | |
assert type(M) == nx.MultiGraph | |
def test_read_sparse6(self): | |
data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM" | |
G = nx.from_sparse6_bytes(data) | |
fh = BytesIO(data) | |
Gin = nx.read_sparse6(fh) | |
assert nodes_equal(G.nodes(), Gin.nodes()) | |
assert edges_equal(G.edges(), Gin.edges()) | |
def test_read_many_graph6(self): | |
# Read many graphs into list | |
data = b":Q___eDcdFcDeFcE`GaJ`IaHbKNbLM\n" b":Q___dCfDEdcEgcbEGbFIaJ`JaHN`IM" | |
fh = BytesIO(data) | |
glist = nx.read_sparse6(fh) | |
assert len(glist) == 2 | |
for G in glist: | |
assert nodes_equal( | |
G.nodes(), | |
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17], | |
) | |
class TestWriteSparse6: | |
"""Unit tests for writing graphs in the sparse6 format. | |
Most of the test cases were checked against the sparse6 encoder in Sage. | |
""" | |
def test_null_graph(self): | |
G = nx.null_graph() | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:?\n" | |
def test_trivial_graph(self): | |
G = nx.trivial_graph() | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:@\n" | |
def test_empty_graph(self): | |
G = nx.empty_graph(5) | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:D\n" | |
def test_large_empty_graph(self): | |
G = nx.empty_graph(68) | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:~?@C\n" | |
def test_very_large_empty_graph(self): | |
G = nx.empty_graph(258049) | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:~~???~?@\n" | |
def test_complete_graph(self): | |
G = nx.complete_graph(4) | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
assert result.getvalue() == b">>sparse6<<:CcKI\n" | |
def test_no_header(self): | |
G = nx.complete_graph(4) | |
result = BytesIO() | |
nx.write_sparse6(G, result, header=False) | |
assert result.getvalue() == b":CcKI\n" | |
def test_padding(self): | |
codes = (b":Cdv", b":DaYn", b":EaYnN", b":FaYnL", b":GaYnLz") | |
for n, code in enumerate(codes, start=4): | |
G = nx.path_graph(n) | |
result = BytesIO() | |
nx.write_sparse6(G, result, header=False) | |
assert result.getvalue() == code + b"\n" | |
def test_complete_bipartite(self): | |
G = nx.complete_bipartite_graph(6, 9) | |
result = BytesIO() | |
nx.write_sparse6(G, result) | |
# Compared with sage | |
expected = b">>sparse6<<:Nk" + b"?G`cJ" * 9 + b"\n" | |
assert result.getvalue() == expected | |
def test_read_write_inverse(self): | |
for i in list(range(13)) + [31, 47, 62, 63, 64, 72]: | |
m = min(2 * i, i * i // 2) | |
g = nx.random_graphs.gnm_random_graph(i, m, seed=i) | |
gstr = BytesIO() | |
nx.write_sparse6(g, gstr, header=False) | |
# Strip the trailing newline. | |
gstr = gstr.getvalue().rstrip() | |
g2 = nx.from_sparse6_bytes(gstr) | |
assert g2.order() == g.order() | |
assert edges_equal(g2.edges(), g.edges()) | |
def test_no_directed_graphs(self): | |
with pytest.raises(nx.NetworkXNotImplemented): | |
nx.write_sparse6(nx.DiGraph(), BytesIO()) | |
def test_write_path(self): | |
# On Windows, we can't reopen a file that is open | |
# So, for test we get a valid name from tempfile but close it. | |
with tempfile.NamedTemporaryFile() as f: | |
fullfilename = f.name | |
# file should be closed now, so write_sparse6 can open it | |
nx.write_sparse6(nx.null_graph(), fullfilename) | |
fh = open(fullfilename, mode="rb") | |
assert fh.read() == b">>sparse6<<:?\n" | |
fh.close() | |
import os | |
os.remove(fullfilename) | |