Spaces:
Running
Running
File size: 47,127 Bytes
b200bda |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 |
"""Base class for MultiGraph."""
from copy import deepcopy
from functools import cached_property
import networkx as nx
from networkx import NetworkXError, convert
from networkx.classes.coreviews import MultiAdjacencyView
from networkx.classes.graph import Graph
from networkx.classes.reportviews import MultiDegreeView, MultiEdgeView
__all__ = ["MultiGraph"]
class MultiGraph(Graph):
"""
An undirected graph class that can store multiedges.
Multiedges are multiple edges between two nodes. Each edge
can hold optional data or attributes.
A MultiGraph holds undirected edges. Self loops are allowed.
Nodes can be arbitrary (hashable) Python objects with optional
key/value attributes. By convention `None` is not used as a node.
Edges are represented as links between nodes with optional
key/value attributes, in a MultiGraph each edge has a key to
distinguish between multiple edges that have the same source and
destination nodes.
Parameters
----------
incoming_graph_data : input graph (optional, default: None)
Data to initialize graph. If None (default) an empty
graph is created. The data can be any format that is supported
by the to_networkx_graph() function, currently including edge list,
dict of dicts, dict of lists, NetworkX graph, 2D NumPy array,
SciPy sparse array, or PyGraphviz graph.
multigraph_input : bool or None (default None)
Note: Only used when `incoming_graph_data` is a dict.
If True, `incoming_graph_data` is assumed to be a
dict-of-dict-of-dict-of-dict structure keyed by
node to neighbor to edge keys to edge data for multi-edges.
A NetworkXError is raised if this is not the case.
If False, :func:`to_networkx_graph` is used to try to determine
the dict's graph data structure as either a dict-of-dict-of-dict
keyed by node to neighbor to edge data, or a dict-of-iterable
keyed by node to neighbors.
If None, the treatment for True is tried, but if it fails,
the treatment for False is tried.
attr : keyword arguments, optional (default= no attributes)
Attributes to add to graph as key=value pairs.
See Also
--------
Graph
DiGraph
MultiDiGraph
Examples
--------
Create an empty graph structure (a "null graph") with no nodes and
no edges.
>>> G = nx.MultiGraph()
G can be grown in several ways.
**Nodes:**
Add one node at a time:
>>> G.add_node(1)
Add the nodes from any container (a list, dict, set or
even the lines from a file or the nodes from another graph).
>>> G.add_nodes_from([2, 3])
>>> G.add_nodes_from(range(100, 110))
>>> H = nx.path_graph(10)
>>> G.add_nodes_from(H)
In addition to strings and integers any hashable Python object
(except None) can represent a node, e.g. a customized node object,
or even another Graph.
>>> G.add_node(H)
**Edges:**
G can also be grown by adding edges.
Add one edge,
>>> key = G.add_edge(1, 2)
a list of edges,
>>> keys = G.add_edges_from([(1, 2), (1, 3)])
or a collection of edges,
>>> keys = G.add_edges_from(H.edges)
If some edges connect nodes not yet in the graph, the nodes
are added automatically. If an edge already exists, an additional
edge is created and stored using a key to identify the edge.
By default the key is the lowest unused integer.
>>> keys = G.add_edges_from([(4, 5, {"route": 28}), (4, 5, {"route": 37})])
>>> G[4]
AdjacencyView({3: {0: {}}, 5: {0: {}, 1: {'route': 28}, 2: {'route': 37}}})
**Attributes:**
Each graph, node, and edge can hold key/value attribute pairs
in an associated attribute dictionary (the keys must be hashable).
By default these are empty, but can be added or changed using
add_edge, add_node or direct manipulation of the attribute
dictionaries named graph, node and edge respectively.
>>> G = nx.MultiGraph(day="Friday")
>>> G.graph
{'day': 'Friday'}
Add node attributes using add_node(), add_nodes_from() or G.nodes
>>> G.add_node(1, time="5pm")
>>> G.add_nodes_from([3], time="2pm")
>>> G.nodes[1]
{'time': '5pm'}
>>> G.nodes[1]["room"] = 714
>>> del G.nodes[1]["room"] # remove attribute
>>> list(G.nodes(data=True))
[(1, {'time': '5pm'}), (3, {'time': '2pm'})]
Add edge attributes using add_edge(), add_edges_from(), subscript
notation, or G.edges.
>>> key = G.add_edge(1, 2, weight=4.7)
>>> keys = G.add_edges_from([(3, 4), (4, 5)], color="red")
>>> keys = G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})])
>>> G[1][2][0]["weight"] = 4.7
>>> G.edges[1, 2, 0]["weight"] = 4
Warning: we protect the graph data structure by making `G.edges[1,
2, 0]` a read-only dict-like structure. However, you can assign to
attributes in e.g. `G.edges[1, 2, 0]`. Thus, use 2 sets of brackets
to add/change data attributes: `G.edges[1, 2, 0]['weight'] = 4`.
**Shortcuts:**
Many common graph features allow python syntax to speed reporting.
>>> 1 in G # check if node in graph
True
>>> [n for n in G if n < 3] # iterate through nodes
[1, 2]
>>> len(G) # number of nodes in graph
5
>>> G[1] # adjacency dict-like view mapping neighbor -> edge key -> edge attributes
AdjacencyView({2: {0: {'weight': 4}, 1: {'color': 'blue'}}})
Often the best way to traverse all edges of a graph is via the neighbors.
The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()`.
>>> for n, nbrsdict in G.adjacency():
... for nbr, keydict in nbrsdict.items():
... for key, eattr in keydict.items():
... if "weight" in eattr:
... # Do something useful with the edges
... pass
But the edges() method is often more convenient:
>>> for u, v, keys, weight in G.edges(data="weight", keys=True):
... if weight is not None:
... # Do something useful with the edges
... pass
**Reporting:**
Simple graph information is obtained using methods and object-attributes.
Reporting usually provides views instead of containers to reduce memory
usage. The views update as the graph is updated similarly to dict-views.
The objects `nodes`, `edges` and `adj` provide access to data attributes
via lookup (e.g. `nodes[n]`, `edges[u, v, k]`, `adj[u][v]`) and iteration
(e.g. `nodes.items()`, `nodes.data('color')`,
`nodes.data('color', default='blue')` and similarly for `edges`)
Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`.
For details on these and other miscellaneous methods, see below.
**Subclasses (Advanced):**
The MultiGraph class uses a dict-of-dict-of-dict-of-dict data structure.
The outer dict (node_dict) holds adjacency information keyed by node.
The next dict (adjlist_dict) represents the adjacency information
and holds edge_key dicts keyed by neighbor. The edge_key dict holds
each edge_attr dict keyed by edge key. The inner dict
(edge_attr_dict) represents the edge data and holds edge attribute
values keyed by attribute names.
Each of these four dicts in the dict-of-dict-of-dict-of-dict
structure can be replaced by a user defined dict-like object.
In general, the dict-like features should be maintained but
extra features can be added. To replace one of the dicts create
a new graph class by changing the class(!) variable holding the
factory for that dict-like structure. The variable names are
node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory,
adjlist_outer_dict_factory, edge_key_dict_factory, edge_attr_dict_factory
and graph_attr_dict_factory.
node_dict_factory : function, (default: dict)
Factory function to be used to create the dict containing node
attributes, keyed by node id.
It should require no arguments and return a dict-like object
node_attr_dict_factory: function, (default: dict)
Factory function to be used to create the node attribute
dict which holds attribute values keyed by attribute name.
It should require no arguments and return a dict-like object
adjlist_outer_dict_factory : function, (default: dict)
Factory function to be used to create the outer-most dict
in the data structure that holds adjacency info keyed by node.
It should require no arguments and return a dict-like object.
adjlist_inner_dict_factory : function, (default: dict)
Factory function to be used to create the adjacency list
dict which holds multiedge key dicts keyed by neighbor.
It should require no arguments and return a dict-like object.
edge_key_dict_factory : function, (default: dict)
Factory function to be used to create the edge key dict
which holds edge data keyed by edge key.
It should require no arguments and return a dict-like object.
edge_attr_dict_factory : function, (default: dict)
Factory function to be used to create the edge attribute
dict which holds attribute values keyed by attribute name.
It should require no arguments and return a dict-like object.
graph_attr_dict_factory : function, (default: dict)
Factory function to be used to create the graph attribute
dict which holds attribute values keyed by attribute name.
It should require no arguments and return a dict-like object.
Typically, if your extension doesn't impact the data structure all
methods will inherited without issue except: `to_directed/to_undirected`.
By default these methods create a DiGraph/Graph class and you probably
want them to create your extension of a DiGraph/Graph. To facilitate
this we define two class variables that you can set in your subclass.
to_directed_class : callable, (default: DiGraph or MultiDiGraph)
Class to create a new graph structure in the `to_directed` method.
If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used.
to_undirected_class : callable, (default: Graph or MultiGraph)
Class to create a new graph structure in the `to_undirected` method.
If `None`, a NetworkX class (Graph or MultiGraph) is used.
**Subclassing Example**
Create a low memory graph class that effectively disallows edge
attributes by using a single attribute dict for all edges.
This reduces the memory used, but you lose edge attributes.
>>> class ThinGraph(nx.Graph):
... all_edge_dict = {"weight": 1}
...
... def single_edge_dict(self):
... return self.all_edge_dict
...
... edge_attr_dict_factory = single_edge_dict
>>> G = ThinGraph()
>>> G.add_edge(2, 1)
>>> G[2][1]
{'weight': 1}
>>> G.add_edge(2, 2)
>>> G[2][1] is G[2][2]
True
"""
# node_dict_factory = dict # already assigned in Graph
# adjlist_outer_dict_factory = dict
# adjlist_inner_dict_factory = dict
edge_key_dict_factory = dict
# edge_attr_dict_factory = dict
def to_directed_class(self):
"""Returns the class to use for empty directed copies.
If you subclass the base classes, use this to designate
what directed class to use for `to_directed()` copies.
"""
return nx.MultiDiGraph
def to_undirected_class(self):
"""Returns the class to use for empty undirected copies.
If you subclass the base classes, use this to designate
what directed class to use for `to_directed()` copies.
"""
return MultiGraph
def __init__(self, incoming_graph_data=None, multigraph_input=None, **attr):
"""Initialize a graph with edges, name, or graph attributes.
Parameters
----------
incoming_graph_data : input graph
Data to initialize graph. If incoming_graph_data=None (default)
an empty graph is created. The data can be an edge list, or any
NetworkX graph object. If the corresponding optional Python
packages are installed the data can also be a 2D NumPy array, a
SciPy sparse array, or a PyGraphviz graph.
multigraph_input : bool or None (default None)
Note: Only used when `incoming_graph_data` is a dict.
If True, `incoming_graph_data` is assumed to be a
dict-of-dict-of-dict-of-dict structure keyed by
node to neighbor to edge keys to edge data for multi-edges.
A NetworkXError is raised if this is not the case.
If False, :func:`to_networkx_graph` is used to try to determine
the dict's graph data structure as either a dict-of-dict-of-dict
keyed by node to neighbor to edge data, or a dict-of-iterable
keyed by node to neighbors.
If None, the treatment for True is tried, but if it fails,
the treatment for False is tried.
attr : keyword arguments, optional (default= no attributes)
Attributes to add to graph as key=value pairs.
See Also
--------
convert
Examples
--------
>>> G = nx.MultiGraph()
>>> G = nx.MultiGraph(name="my graph")
>>> e = [(1, 2), (1, 2), (2, 3), (3, 4)] # list of edges
>>> G = nx.MultiGraph(e)
Arbitrary graph attribute pairs (key=value) may be assigned
>>> G = nx.MultiGraph(e, day="Friday")
>>> G.graph
{'day': 'Friday'}
"""
# multigraph_input can be None/True/False. So check "is not False"
if isinstance(incoming_graph_data, dict) and multigraph_input is not False:
Graph.__init__(self)
try:
convert.from_dict_of_dicts(
incoming_graph_data, create_using=self, multigraph_input=True
)
self.graph.update(attr)
except Exception as err:
if multigraph_input is True:
raise nx.NetworkXError(
f"converting multigraph_input raised:\n{type(err)}: {err}"
)
Graph.__init__(self, incoming_graph_data, **attr)
else:
Graph.__init__(self, incoming_graph_data, **attr)
@cached_property
def adj(self):
"""Graph adjacency object holding the neighbors of each node.
This object is a read-only dict-like structure with node keys
and neighbor-dict values. The neighbor-dict is keyed by neighbor
to the edgekey-data-dict. So `G.adj[3][2][0]['color'] = 'blue'` sets
the color of the edge `(3, 2, 0)` to `"blue"`.
Iterating over G.adj behaves like a dict. Useful idioms include
`for nbr, edgesdict in G.adj[n].items():`.
The neighbor information is also provided by subscripting the graph.
Examples
--------
>>> e = [(1, 2), (1, 2), (1, 3), (3, 4)] # list of edges
>>> G = nx.MultiGraph(e)
>>> G.edges[1, 2, 0]["weight"] = 3
>>> result = set()
>>> for edgekey, data in G[1][2].items():
... result.add(data.get('weight', 1))
>>> result
{1, 3}
For directed graphs, `G.adj` holds outgoing (successor) info.
"""
return MultiAdjacencyView(self._adj)
def new_edge_key(self, u, v):
"""Returns an unused key for edges between nodes `u` and `v`.
The nodes `u` and `v` do not need to be already in the graph.
Notes
-----
In the standard MultiGraph class the new key is the number of existing
edges between `u` and `v` (increased if necessary to ensure unused).
The first edge will have key 0, then 1, etc. If an edge is removed
further new_edge_keys may not be in this order.
Parameters
----------
u, v : nodes
Returns
-------
key : int
"""
try:
keydict = self._adj[u][v]
except KeyError:
return 0
key = len(keydict)
while key in keydict:
key += 1
return key
def add_edge(self, u_for_edge, v_for_edge, key=None, **attr):
"""Add an edge between u and v.
The nodes u and v will be automatically added if they are
not already in the graph.
Edge attributes can be specified with keywords or by directly
accessing the edge's attribute dictionary. See examples below.
Parameters
----------
u_for_edge, v_for_edge : nodes
Nodes can be, for example, strings or numbers.
Nodes must be hashable (and not None) Python objects.
key : hashable identifier, optional (default=lowest unused integer)
Used to distinguish multiedges between a pair of nodes.
attr : keyword arguments, optional
Edge data (or labels or objects) can be assigned using
keyword arguments.
Returns
-------
The edge key assigned to the edge.
See Also
--------
add_edges_from : add a collection of edges
Notes
-----
To replace/update edge data, use the optional key argument
to identify a unique edge. Otherwise a new edge will be created.
NetworkX algorithms designed for weighted graphs cannot use
multigraphs directly because it is not clear how to handle
multiedge weights. Convert to Graph using edge attribute
'weight' to enable weighted graph algorithms.
Default keys are generated using the method `new_edge_key()`.
This method can be overridden by subclassing the base class and
providing a custom `new_edge_key()` method.
Examples
--------
The following each add an additional edge e=(1, 2) to graph G:
>>> G = nx.MultiGraph()
>>> e = (1, 2)
>>> ekey = G.add_edge(1, 2) # explicit two-node form
>>> G.add_edge(*e) # single edge as tuple of two nodes
1
>>> G.add_edges_from([(1, 2)]) # add edges from iterable container
[2]
Associate data to edges using keywords:
>>> ekey = G.add_edge(1, 2, weight=3)
>>> ekey = G.add_edge(1, 2, key=0, weight=4) # update data for key=0
>>> ekey = G.add_edge(1, 3, weight=7, capacity=15, length=342.7)
For non-string attribute keys, use subscript notation.
>>> ekey = G.add_edge(1, 2)
>>> G[1][2][0].update({0: 5})
>>> G.edges[1, 2, 0].update({0: 5})
"""
u, v = u_for_edge, v_for_edge
# add nodes
if u not in self._adj:
if u is None:
raise ValueError("None cannot be a node")
self._adj[u] = self.adjlist_inner_dict_factory()
self._node[u] = self.node_attr_dict_factory()
if v not in self._adj:
if v is None:
raise ValueError("None cannot be a node")
self._adj[v] = self.adjlist_inner_dict_factory()
self._node[v] = self.node_attr_dict_factory()
if key is None:
key = self.new_edge_key(u, v)
if v in self._adj[u]:
keydict = self._adj[u][v]
datadict = keydict.get(key, self.edge_attr_dict_factory())
datadict.update(attr)
keydict[key] = datadict
else:
# selfloops work this way without special treatment
datadict = self.edge_attr_dict_factory()
datadict.update(attr)
keydict = self.edge_key_dict_factory()
keydict[key] = datadict
self._adj[u][v] = keydict
self._adj[v][u] = keydict
return key
def add_edges_from(self, ebunch_to_add, **attr):
"""Add all the edges in ebunch_to_add.
Parameters
----------
ebunch_to_add : container of edges
Each edge given in the container will be added to the
graph. The edges can be:
- 2-tuples (u, v) or
- 3-tuples (u, v, d) for an edge data dict d, or
- 3-tuples (u, v, k) for not iterable key k, or
- 4-tuples (u, v, k, d) for an edge with data and key k
attr : keyword arguments, optional
Edge data (or labels or objects) can be assigned using
keyword arguments.
Returns
-------
A list of edge keys assigned to the edges in `ebunch`.
See Also
--------
add_edge : add a single edge
add_weighted_edges_from : convenient way to add weighted edges
Notes
-----
Adding the same edge twice has no effect but any edge data
will be updated when each duplicate edge is added.
Edge attributes specified in an ebunch take precedence over
attributes specified via keyword arguments.
Default keys are generated using the method ``new_edge_key()``.
This method can be overridden by subclassing the base class and
providing a custom ``new_edge_key()`` method.
When adding edges from an iterator over the graph you are changing,
a `RuntimeError` can be raised with message:
`RuntimeError: dictionary changed size during iteration`. This
happens when the graph's underlying dictionary is modified during
iteration. To avoid this error, evaluate the iterator into a separate
object, e.g. by using `list(iterator_of_edges)`, and pass this
object to `G.add_edges_from`.
Examples
--------
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
>>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples
>>> e = zip(range(0, 3), range(1, 4))
>>> G.add_edges_from(e) # Add the path graph 0-1-2-3
Associate data to edges
>>> G.add_edges_from([(1, 2), (2, 3)], weight=3)
>>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898")
Evaluate an iterator over a graph if using it to modify the same graph
>>> G = nx.MultiGraph([(1, 2), (2, 3), (3, 4)])
>>> # Grow graph by one new node, adding edges to all existing nodes.
>>> # wrong way - will raise RuntimeError
>>> # G.add_edges_from(((5, n) for n in G.nodes))
>>> # right way - note that there will be no self-edge for node 5
>>> assigned_keys = G.add_edges_from(list((5, n) for n in G.nodes))
"""
keylist = []
for e in ebunch_to_add:
ne = len(e)
if ne == 4:
u, v, key, dd = e
elif ne == 3:
u, v, dd = e
key = None
elif ne == 2:
u, v = e
dd = {}
key = None
else:
msg = f"Edge tuple {e} must be a 2-tuple, 3-tuple or 4-tuple."
raise NetworkXError(msg)
ddd = {}
ddd.update(attr)
try:
ddd.update(dd)
except (TypeError, ValueError):
if ne != 3:
raise
key = dd # ne == 3 with 3rd value not dict, must be a key
key = self.add_edge(u, v, key)
self[u][v][key].update(ddd)
keylist.append(key)
return keylist
def remove_edge(self, u, v, key=None):
"""Remove an edge between u and v.
Parameters
----------
u, v : nodes
Remove an edge between nodes u and v.
key : hashable identifier, optional (default=None)
Used to distinguish multiple edges between a pair of nodes.
If None, remove a single edge between u and v. If there are
multiple edges, removes the last edge added in terms of
insertion order.
Raises
------
NetworkXError
If there is not an edge between u and v, or
if there is no edge with the specified key.
See Also
--------
remove_edges_from : remove a collection of edges
Examples
--------
>>> G = nx.MultiGraph()
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.remove_edge(0, 1)
>>> e = (1, 2)
>>> G.remove_edge(*e) # unpacks e from an edge tuple
For multiple edges
>>> G = nx.MultiGraph() # or MultiDiGraph, etc
>>> G.add_edges_from([(1, 2), (1, 2), (1, 2)]) # key_list returned
[0, 1, 2]
When ``key=None`` (the default), edges are removed in the opposite
order that they were added:
>>> G.remove_edge(1, 2)
>>> G.edges(keys=True)
MultiEdgeView([(1, 2, 0), (1, 2, 1)])
>>> G.remove_edge(2, 1) # edges are not directed
>>> G.edges(keys=True)
MultiEdgeView([(1, 2, 0)])
For edges with keys
>>> G = nx.MultiGraph()
>>> G.add_edge(1, 2, key="first")
'first'
>>> G.add_edge(1, 2, key="second")
'second'
>>> G.remove_edge(1, 2, key="first")
>>> G.edges(keys=True)
MultiEdgeView([(1, 2, 'second')])
"""
try:
d = self._adj[u][v]
except KeyError as err:
raise NetworkXError(f"The edge {u}-{v} is not in the graph.") from err
# remove the edge with specified data
if key is None:
d.popitem()
else:
try:
del d[key]
except KeyError as err:
msg = f"The edge {u}-{v} with key {key} is not in the graph."
raise NetworkXError(msg) from err
if len(d) == 0:
# remove the key entries if last edge
del self._adj[u][v]
if u != v: # check for selfloop
del self._adj[v][u]
def remove_edges_from(self, ebunch):
"""Remove all edges specified in ebunch.
Parameters
----------
ebunch: list or container of edge tuples
Each edge given in the list or container will be removed
from the graph. The edges can be:
- 2-tuples (u, v) A single edge between u and v is removed.
- 3-tuples (u, v, key) The edge identified by key is removed.
- 4-tuples (u, v, key, data) where data is ignored.
See Also
--------
remove_edge : remove a single edge
Notes
-----
Will fail silently if an edge in ebunch is not in the graph.
Examples
--------
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
>>> ebunch = [(1, 2), (2, 3)]
>>> G.remove_edges_from(ebunch)
Removing multiple copies of edges
>>> G = nx.MultiGraph()
>>> keys = G.add_edges_from([(1, 2), (1, 2), (1, 2)])
>>> G.remove_edges_from([(1, 2), (2, 1)]) # edges aren't directed
>>> list(G.edges())
[(1, 2)]
>>> G.remove_edges_from([(1, 2), (1, 2)]) # silently ignore extra copy
>>> list(G.edges) # now empty graph
[]
When the edge is a 2-tuple ``(u, v)`` but there are multiple edges between
u and v in the graph, the most recent edge (in terms of insertion
order) is removed.
>>> G = nx.MultiGraph()
>>> for key in ("x", "y", "a"):
... k = G.add_edge(0, 1, key=key)
>>> G.edges(keys=True)
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y'), (0, 1, 'a')])
>>> G.remove_edges_from([(0, 1)])
>>> G.edges(keys=True)
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y')])
"""
for e in ebunch:
try:
self.remove_edge(*e[:3])
except NetworkXError:
pass
def has_edge(self, u, v, key=None):
"""Returns True if the graph has an edge between nodes u and v.
This is the same as `v in G[u] or key in G[u][v]`
without KeyError exceptions.
Parameters
----------
u, v : nodes
Nodes can be, for example, strings or numbers.
key : hashable identifier, optional (default=None)
If specified return True only if the edge with
key is found.
Returns
-------
edge_ind : bool
True if edge is in the graph, False otherwise.
Examples
--------
Can be called either using two nodes u, v, an edge tuple (u, v),
or an edge tuple (u, v, key).
>>> G = nx.MultiGraph() # or MultiDiGraph
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.has_edge(0, 1) # using two nodes
True
>>> e = (0, 1)
>>> G.has_edge(*e) # e is a 2-tuple (u, v)
True
>>> G.add_edge(0, 1, key="a")
'a'
>>> G.has_edge(0, 1, key="a") # specify key
True
>>> G.has_edge(1, 0, key="a") # edges aren't directed
True
>>> e = (0, 1, "a")
>>> G.has_edge(*e) # e is a 3-tuple (u, v, 'a')
True
The following syntax are equivalent:
>>> G.has_edge(0, 1)
True
>>> 1 in G[0] # though this gives :exc:`KeyError` if 0 not in G
True
>>> 0 in G[1] # other order; also gives :exc:`KeyError` if 0 not in G
True
"""
try:
if key is None:
return v in self._adj[u]
else:
return key in self._adj[u][v]
except KeyError:
return False
@cached_property
def edges(self):
"""Returns an iterator over the edges.
edges(self, nbunch=None, data=False, keys=False, default=None)
The MultiEdgeView provides set-like operations on the edge-tuples
as well as edge attribute lookup. When called, it also provides
an EdgeDataView object which allows control of access to edge
attributes (but does not provide set-like operations).
Hence, ``G.edges[u, v, k]['color']`` provides the value of the color
attribute for the edge from ``u`` to ``v`` with key ``k`` while
``for (u, v, k, c) in G.edges(data='color', keys=True, default="red"):``
iterates through all the edges yielding the color attribute with
default `'red'` if no color attribute exists.
Edges are returned as tuples with optional data and keys
in the order (node, neighbor, key, data). If ``keys=True`` is not
provided, the tuples will just be (node, neighbor, data), but
multiple tuples with the same node and neighbor will be generated
when multiple edges exist between two nodes.
Parameters
----------
nbunch : single node, container, or all nodes (default= all nodes)
The view will only report edges from these nodes.
data : string or bool, optional (default=False)
The edge attribute returned in 3-tuple (u, v, ddict[data]).
If True, return edge attribute dict in 3-tuple (u, v, ddict).
If False, return 2-tuple (u, v).
keys : bool, optional (default=False)
If True, return edge keys with each edge, creating (u, v, k)
tuples or (u, v, k, d) tuples if data is also requested.
default : value, optional (default=None)
Value used for edges that don't have the requested attribute.
Only relevant if data is not True or False.
Returns
-------
edges : MultiEdgeView
A view of edge attributes, usually it iterates over (u, v)
(u, v, k) or (u, v, k, d) tuples of edges, but can also be
used for attribute lookup as ``edges[u, v, k]['foo']``.
Notes
-----
Nodes in nbunch that are not in the graph will be (quietly) ignored.
For directed graphs this returns the out-edges.
Examples
--------
>>> G = nx.MultiGraph()
>>> nx.add_path(G, [0, 1, 2])
>>> key = G.add_edge(2, 3, weight=5)
>>> key2 = G.add_edge(2, 1, weight=2) # multi-edge
>>> [e for e in G.edges()]
[(0, 1), (1, 2), (1, 2), (2, 3)]
>>> G.edges.data() # default data is {} (empty dict)
MultiEdgeDataView([(0, 1, {}), (1, 2, {}), (1, 2, {'weight': 2}), (2, 3, {'weight': 5})])
>>> G.edges.data("weight", default=1)
MultiEdgeDataView([(0, 1, 1), (1, 2, 1), (1, 2, 2), (2, 3, 5)])
>>> G.edges(keys=True) # default keys are integers
MultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 1), (2, 3, 0)])
>>> G.edges.data(keys=True)
MultiEdgeDataView([(0, 1, 0, {}), (1, 2, 0, {}), (1, 2, 1, {'weight': 2}), (2, 3, 0, {'weight': 5})])
>>> G.edges.data("weight", default=1, keys=True)
MultiEdgeDataView([(0, 1, 0, 1), (1, 2, 0, 1), (1, 2, 1, 2), (2, 3, 0, 5)])
>>> G.edges([0, 3]) # Note ordering of tuples from listed sources
MultiEdgeDataView([(0, 1), (3, 2)])
>>> G.edges([0, 3, 2, 1]) # Note ordering of tuples
MultiEdgeDataView([(0, 1), (3, 2), (2, 1), (2, 1)])
>>> G.edges(0)
MultiEdgeDataView([(0, 1)])
"""
return MultiEdgeView(self)
def get_edge_data(self, u, v, key=None, default=None):
"""Returns the attribute dictionary associated with edge (u, v,
key).
If a key is not provided, returns a dictionary mapping edge keys
to attribute dictionaries for each edge between u and v.
This is identical to `G[u][v][key]` except the default is returned
instead of an exception is the edge doesn't exist.
Parameters
----------
u, v : nodes
default : any Python object (default=None)
Value to return if the specific edge (u, v, key) is not
found, OR if there are no edges between u and v and no key
is specified.
key : hashable identifier, optional (default=None)
Return data only for the edge with specified key, as an
attribute dictionary (rather than a dictionary mapping keys
to attribute dictionaries).
Returns
-------
edge_dict : dictionary
The edge attribute dictionary, OR a dictionary mapping edge
keys to attribute dictionaries for each of those edges if no
specific key is provided (even if there's only one edge
between u and v).
Examples
--------
>>> G = nx.MultiGraph() # or MultiDiGraph
>>> key = G.add_edge(0, 1, key="a", weight=7)
>>> G[0][1]["a"] # key='a'
{'weight': 7}
>>> G.edges[0, 1, "a"] # key='a'
{'weight': 7}
Warning: we protect the graph data structure by making
`G.edges` and `G[1][2]` read-only dict-like structures.
However, you can assign values to attributes in e.g.
`G.edges[1, 2, 'a']` or `G[1][2]['a']` using an additional
bracket as shown next. You need to specify all edge info
to assign to the edge data associated with an edge.
>>> G[0][1]["a"]["weight"] = 10
>>> G.edges[0, 1, "a"]["weight"] = 10
>>> G[0][1]["a"]["weight"]
10
>>> G.edges[1, 0, "a"]["weight"]
10
>>> G = nx.MultiGraph() # or MultiDiGraph
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.edges[0, 1, 0]["weight"] = 5
>>> G.get_edge_data(0, 1)
{0: {'weight': 5}}
>>> e = (0, 1)
>>> G.get_edge_data(*e) # tuple form
{0: {'weight': 5}}
>>> G.get_edge_data(3, 0) # edge not in graph, returns None
>>> G.get_edge_data(3, 0, default=0) # edge not in graph, return default
0
>>> G.get_edge_data(1, 0, 0) # specific key gives back
{'weight': 5}
"""
try:
if key is None:
return self._adj[u][v]
else:
return self._adj[u][v][key]
except KeyError:
return default
@cached_property
def degree(self):
"""A DegreeView for the Graph as G.degree or G.degree().
The node degree is the number of edges adjacent to the node.
The weighted node degree is the sum of the edge weights for
edges incident to that node.
This object provides an iterator for (node, degree) as well as
lookup for the degree for a single node.
Parameters
----------
nbunch : single node, container, or all nodes (default= all nodes)
The view will only report edges incident to these nodes.
weight : string or None, optional (default=None)
The name of an edge attribute that holds the numerical value used
as a weight. If None, then each edge has weight 1.
The degree is the sum of the edge weights adjacent to the node.
Returns
-------
MultiDegreeView or int
If multiple nodes are requested (the default), returns a `MultiDegreeView`
mapping nodes to their degree.
If a single node is requested, returns the degree of the node as an integer.
Examples
--------
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.degree(0) # node 0 with degree 1
1
>>> list(G.degree([0, 1]))
[(0, 1), (1, 2)]
"""
return MultiDegreeView(self)
def is_multigraph(self):
"""Returns True if graph is a multigraph, False otherwise."""
return True
def is_directed(self):
"""Returns True if graph is directed, False otherwise."""
return False
def copy(self, as_view=False):
"""Returns a copy of the graph.
The copy method by default returns an independent shallow copy
of the graph and attributes. That is, if an attribute is a
container, that container is shared by the original an the copy.
Use Python's `copy.deepcopy` for new containers.
If `as_view` is True then a view is returned instead of a copy.
Notes
-----
All copies reproduce the graph structure, but data attributes
may be handled in different ways. There are four types of copies
of a graph that people might want.
Deepcopy -- A "deepcopy" copies the graph structure as well as
all data attributes and any objects they might contain.
The entire graph object is new so that changes in the copy
do not affect the original object. (see Python's copy.deepcopy)
Data Reference (Shallow) -- For a shallow copy the graph structure
is copied but the edge, node and graph attribute dicts are
references to those in the original graph. This saves
time and memory but could cause confusion if you change an attribute
in one graph and it changes the attribute in the other.
NetworkX does not provide this level of shallow copy.
Independent Shallow -- This copy creates new independent attribute
dicts and then does a shallow copy of the attributes. That is, any
attributes that are containers are shared between the new graph
and the original. This is exactly what `dict.copy()` provides.
You can obtain this style copy using:
>>> G = nx.path_graph(5)
>>> H = G.copy()
>>> H = G.copy(as_view=False)
>>> H = nx.Graph(G)
>>> H = G.__class__(G)
Fresh Data -- For fresh data, the graph structure is copied while
new empty data attribute dicts are created. The resulting graph
is independent of the original and it has no edge, node or graph
attributes. Fresh copies are not enabled. Instead use:
>>> H = G.__class__()
>>> H.add_nodes_from(G)
>>> H.add_edges_from(G.edges)
View -- Inspired by dict-views, graph-views act like read-only
versions of the original graph, providing a copy of the original
structure without requiring any memory for copying the information.
See the Python copy module for more information on shallow
and deep copies, https://docs.python.org/3/library/copy.html.
Parameters
----------
as_view : bool, optional (default=False)
If True, the returned graph-view provides a read-only view
of the original graph without actually copying any data.
Returns
-------
G : Graph
A copy of the graph.
See Also
--------
to_directed: return a directed copy of the graph.
Examples
--------
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
>>> H = G.copy()
"""
if as_view is True:
return nx.graphviews.generic_graph_view(self)
G = self.__class__()
G.graph.update(self.graph)
G.add_nodes_from((n, d.copy()) for n, d in self._node.items())
G.add_edges_from(
(u, v, key, datadict.copy())
for u, nbrs in self._adj.items()
for v, keydict in nbrs.items()
for key, datadict in keydict.items()
)
return G
def to_directed(self, as_view=False):
"""Returns a directed representation of the graph.
Returns
-------
G : MultiDiGraph
A directed graph with the same name, same nodes, and with
each edge (u, v, k, data) replaced by two directed edges
(u, v, k, data) and (v, u, k, data).
Notes
-----
This returns a "deepcopy" of the edge, node, and
graph attributes which attempts to completely copy
all of the data and references.
This is in contrast to the similar D=MultiDiGraph(G) which
returns a shallow copy of the data.
See the Python copy module for more information on shallow
and deep copies, https://docs.python.org/3/library/copy.html.
Warning: If you have subclassed MultiGraph to use dict-like objects
in the data structure, those changes do not transfer to the
MultiDiGraph created by this method.
Examples
--------
>>> G = nx.MultiGraph()
>>> G.add_edge(0, 1)
0
>>> G.add_edge(0, 1)
1
>>> H = G.to_directed()
>>> list(H.edges)
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1)]
If already directed, return a (deep) copy
>>> G = nx.MultiDiGraph()
>>> G.add_edge(0, 1)
0
>>> H = G.to_directed()
>>> list(H.edges)
[(0, 1, 0)]
"""
graph_class = self.to_directed_class()
if as_view is True:
return nx.graphviews.generic_graph_view(self, graph_class)
# deepcopy when not a view
G = graph_class()
G.graph.update(deepcopy(self.graph))
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items())
G.add_edges_from(
(u, v, key, deepcopy(datadict))
for u, nbrs in self.adj.items()
for v, keydict in nbrs.items()
for key, datadict in keydict.items()
)
return G
def to_undirected(self, as_view=False):
"""Returns an undirected copy of the graph.
Returns
-------
G : Graph/MultiGraph
A deepcopy of the graph.
See Also
--------
copy, add_edge, add_edges_from
Notes
-----
This returns a "deepcopy" of the edge, node, and
graph attributes which attempts to completely copy
all of the data and references.
This is in contrast to the similar `G = nx.MultiGraph(D)`
which returns a shallow copy of the data.
See the Python copy module for more information on shallow
and deep copies, https://docs.python.org/3/library/copy.html.
Warning: If you have subclassed MultiGraph to use dict-like
objects in the data structure, those changes do not transfer
to the MultiGraph created by this method.
Examples
--------
>>> G = nx.MultiGraph([(0, 1), (0, 1), (1, 2)])
>>> H = G.to_directed()
>>> list(H.edges)
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1), (1, 2, 0), (2, 1, 0)]
>>> G2 = H.to_undirected()
>>> list(G2.edges)
[(0, 1, 0), (0, 1, 1), (1, 2, 0)]
"""
graph_class = self.to_undirected_class()
if as_view is True:
return nx.graphviews.generic_graph_view(self, graph_class)
# deepcopy when not a view
G = graph_class()
G.graph.update(deepcopy(self.graph))
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items())
G.add_edges_from(
(u, v, key, deepcopy(datadict))
for u, nbrs in self._adj.items()
for v, keydict in nbrs.items()
for key, datadict in keydict.items()
)
return G
def number_of_edges(self, u=None, v=None):
"""Returns the number of edges between two nodes.
Parameters
----------
u, v : nodes, optional (Default=all edges)
If u and v are specified, return the number of edges between
u and v. Otherwise return the total number of all edges.
Returns
-------
nedges : int
The number of edges in the graph. If nodes `u` and `v` are
specified return the number of edges between those nodes. If
the graph is directed, this only returns the number of edges
from `u` to `v`.
See Also
--------
size
Examples
--------
For undirected multigraphs, this method counts the total number
of edges in the graph::
>>> G = nx.MultiGraph()
>>> G.add_edges_from([(0, 1), (0, 1), (1, 2)])
[0, 1, 0]
>>> G.number_of_edges()
3
If you specify two nodes, this counts the total number of edges
joining the two nodes::
>>> G.number_of_edges(0, 1)
2
For directed multigraphs, this method can count the total number
of directed edges from `u` to `v`::
>>> G = nx.MultiDiGraph()
>>> G.add_edges_from([(0, 1), (0, 1), (1, 0)])
[0, 1, 0]
>>> G.number_of_edges(0, 1)
2
>>> G.number_of_edges(1, 0)
1
"""
if u is None:
return self.size()
try:
edgedata = self._adj[u][v]
except KeyError:
return 0 # no such edge
return len(edgedata)
|