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"""Base class for directed graphs.""" | |
from copy import deepcopy | |
from functools import cached_property | |
import networkx as nx | |
from networkx import convert | |
from networkx.classes.coreviews import AdjacencyView | |
from networkx.classes.graph import Graph | |
from networkx.classes.reportviews import ( | |
DiDegreeView, | |
InDegreeView, | |
InEdgeView, | |
OutDegreeView, | |
OutEdgeView, | |
) | |
from networkx.exception import NetworkXError | |
__all__ = ["DiGraph"] | |
class _CachedPropertyResetterAdjAndSucc: | |
"""Data Descriptor class that syncs and resets cached properties adj and succ | |
The cached properties `adj` and `succ` are reset whenever `_adj` or `_succ` | |
are set to new objects. In addition, the attributes `_succ` and `_adj` | |
are synced so these two names point to the same object. | |
This object sits on a class and ensures that any instance of that | |
class clears its cached properties "succ" and "adj" whenever the | |
underlying instance attributes "_succ" or "_adj" are set to a new object. | |
It only affects the set process of the obj._adj and obj._succ attribute. | |
All get/del operations act as they normally would. | |
For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html | |
""" | |
def __set__(self, obj, value): | |
od = obj.__dict__ | |
od["_adj"] = value | |
od["_succ"] = value | |
# reset cached properties | |
if "adj" in od: | |
del od["adj"] | |
if "succ" in od: | |
del od["succ"] | |
class _CachedPropertyResetterPred: | |
"""Data Descriptor class for _pred that resets ``pred`` cached_property when needed | |
This assumes that the ``cached_property`` ``G.pred`` should be reset whenever | |
``G._pred`` is set to a new value. | |
This object sits on a class and ensures that any instance of that | |
class clears its cached property "pred" whenever the underlying | |
instance attribute "_pred" is set to a new object. It only affects | |
the set process of the obj._pred attribute. All get/del operations | |
act as they normally would. | |
For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html | |
""" | |
def __set__(self, obj, value): | |
od = obj.__dict__ | |
od["_pred"] = value | |
if "pred" in od: | |
del od["pred"] | |
class DiGraph(Graph): | |
""" | |
Base class for directed graphs. | |
A DiGraph stores nodes and edges with optional data, or attributes. | |
DiGraphs hold directed edges. Self loops are allowed but multiple | |
(parallel) edges are not. | |
Nodes can be arbitrary (hashable) Python objects with optional | |
key/value attributes. By convention `None` is not used as a node. | |
Edges are represented as links between nodes with optional | |
key/value attributes. | |
Parameters | |
---------- | |
incoming_graph_data : input graph (optional, default: None) | |
Data to initialize graph. If None (default) an empty | |
graph is created. The data can be any format that is supported | |
by the to_networkx_graph() function, currently including edge list, | |
dict of dicts, dict of lists, NetworkX graph, 2D NumPy array, SciPy | |
sparse matrix, or PyGraphviz graph. | |
attr : keyword arguments, optional (default= no attributes) | |
Attributes to add to graph as key=value pairs. | |
See Also | |
-------- | |
Graph | |
MultiGraph | |
MultiDiGraph | |
Examples | |
-------- | |
Create an empty graph structure (a "null graph") with no nodes and | |
no edges. | |
>>> G = nx.DiGraph() | |
G can be grown in several ways. | |
**Nodes:** | |
Add one node at a time: | |
>>> G.add_node(1) | |
Add the nodes from any container (a list, dict, set or | |
even the lines from a file or the nodes from another graph). | |
>>> G.add_nodes_from([2, 3]) | |
>>> G.add_nodes_from(range(100, 110)) | |
>>> H = nx.path_graph(10) | |
>>> G.add_nodes_from(H) | |
In addition to strings and integers any hashable Python object | |
(except None) can represent a node, e.g. a customized node object, | |
or even another Graph. | |
>>> G.add_node(H) | |
**Edges:** | |
G can also be grown by adding edges. | |
Add one edge, | |
>>> G.add_edge(1, 2) | |
a list of edges, | |
>>> G.add_edges_from([(1, 2), (1, 3)]) | |
or a collection of edges, | |
>>> G.add_edges_from(H.edges) | |
If some edges connect nodes not yet in the graph, the nodes | |
are added automatically. There are no errors when adding | |
nodes or edges that already exist. | |
**Attributes:** | |
Each graph, node, and edge can hold key/value attribute pairs | |
in an associated attribute dictionary (the keys must be hashable). | |
By default these are empty, but can be added or changed using | |
add_edge, add_node or direct manipulation of the attribute | |
dictionaries named graph, node and edge respectively. | |
>>> G = nx.DiGraph(day="Friday") | |
>>> G.graph | |
{'day': 'Friday'} | |
Add node attributes using add_node(), add_nodes_from() or G.nodes | |
>>> G.add_node(1, time="5pm") | |
>>> G.add_nodes_from([3], time="2pm") | |
>>> G.nodes[1] | |
{'time': '5pm'} | |
>>> G.nodes[1]["room"] = 714 | |
>>> del G.nodes[1]["room"] # remove attribute | |
>>> list(G.nodes(data=True)) | |
[(1, {'time': '5pm'}), (3, {'time': '2pm'})] | |
Add edge attributes using add_edge(), add_edges_from(), subscript | |
notation, or G.edges. | |
>>> G.add_edge(1, 2, weight=4.7) | |
>>> G.add_edges_from([(3, 4), (4, 5)], color="red") | |
>>> G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})]) | |
>>> G[1][2]["weight"] = 4.7 | |
>>> G.edges[1, 2]["weight"] = 4 | |
Warning: we protect the graph data structure by making `G.edges[1, 2]` a | |
read-only dict-like structure. However, you can assign to attributes | |
in e.g. `G.edges[1, 2]`. Thus, use 2 sets of brackets to add/change | |
data attributes: `G.edges[1, 2]['weight'] = 4` | |
(For multigraphs: `MG.edges[u, v, key][name] = value`). | |
**Shortcuts:** | |
Many common graph features allow python syntax to speed reporting. | |
>>> 1 in G # check if node in graph | |
True | |
>>> [n for n in G if n < 3] # iterate through nodes | |
[1, 2] | |
>>> len(G) # number of nodes in graph | |
5 | |
Often the best way to traverse all edges of a graph is via the neighbors. | |
The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()` | |
>>> for n, nbrsdict in G.adjacency(): | |
... for nbr, eattr in nbrsdict.items(): | |
... if "weight" in eattr: | |
... # Do something useful with the edges | |
... pass | |
But the edges reporting object is often more convenient: | |
>>> for u, v, weight in G.edges(data="weight"): | |
... if weight is not None: | |
... # Do something useful with the edges | |
... pass | |
**Reporting:** | |
Simple graph information is obtained using object-attributes and methods. | |
Reporting usually provides views instead of containers to reduce memory | |
usage. The views update as the graph is updated similarly to dict-views. | |
The objects `nodes`, `edges` and `adj` provide access to data attributes | |
via lookup (e.g. `nodes[n]`, `edges[u, v]`, `adj[u][v]`) and iteration | |
(e.g. `nodes.items()`, `nodes.data('color')`, | |
`nodes.data('color', default='blue')` and similarly for `edges`) | |
Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`. | |
For details on these and other miscellaneous methods, see below. | |
**Subclasses (Advanced):** | |
The Graph class uses a dict-of-dict-of-dict data structure. | |
The outer dict (node_dict) holds adjacency information keyed by node. | |
The next dict (adjlist_dict) represents the adjacency information and holds | |
edge data keyed by neighbor. The inner dict (edge_attr_dict) represents | |
the edge data and holds edge attribute values keyed by attribute names. | |
Each of these three dicts can be replaced in a subclass by a user defined | |
dict-like object. In general, the dict-like features should be | |
maintained but extra features can be added. To replace one of the | |
dicts create a new graph class by changing the class(!) variable | |
holding the factory for that dict-like structure. The variable names are | |
node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory, | |
adjlist_outer_dict_factory, edge_attr_dict_factory and graph_attr_dict_factory. | |
node_dict_factory : function, (default: dict) | |
Factory function to be used to create the dict containing node | |
attributes, keyed by node id. | |
It should require no arguments and return a dict-like object | |
node_attr_dict_factory: function, (default: dict) | |
Factory function to be used to create the node attribute | |
dict which holds attribute values keyed by attribute name. | |
It should require no arguments and return a dict-like object | |
adjlist_outer_dict_factory : function, (default: dict) | |
Factory function to be used to create the outer-most dict | |
in the data structure that holds adjacency info keyed by node. | |
It should require no arguments and return a dict-like object. | |
adjlist_inner_dict_factory : function, optional (default: dict) | |
Factory function to be used to create the adjacency list | |
dict which holds edge data keyed by neighbor. | |
It should require no arguments and return a dict-like object | |
edge_attr_dict_factory : function, optional (default: dict) | |
Factory function to be used to create the edge attribute | |
dict which holds attribute values keyed by attribute name. | |
It should require no arguments and return a dict-like object. | |
graph_attr_dict_factory : function, (default: dict) | |
Factory function to be used to create the graph attribute | |
dict which holds attribute values keyed by attribute name. | |
It should require no arguments and return a dict-like object. | |
Typically, if your extension doesn't impact the data structure all | |
methods will inherited without issue except: `to_directed/to_undirected`. | |
By default these methods create a DiGraph/Graph class and you probably | |
want them to create your extension of a DiGraph/Graph. To facilitate | |
this we define two class variables that you can set in your subclass. | |
to_directed_class : callable, (default: DiGraph or MultiDiGraph) | |
Class to create a new graph structure in the `to_directed` method. | |
If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used. | |
to_undirected_class : callable, (default: Graph or MultiGraph) | |
Class to create a new graph structure in the `to_undirected` method. | |
If `None`, a NetworkX class (Graph or MultiGraph) is used. | |
**Subclassing Example** | |
Create a low memory graph class that effectively disallows edge | |
attributes by using a single attribute dict for all edges. | |
This reduces the memory used, but you lose edge attributes. | |
>>> class ThinGraph(nx.Graph): | |
... all_edge_dict = {"weight": 1} | |
... | |
... def single_edge_dict(self): | |
... return self.all_edge_dict | |
... | |
... edge_attr_dict_factory = single_edge_dict | |
>>> G = ThinGraph() | |
>>> G.add_edge(2, 1) | |
>>> G[2][1] | |
{'weight': 1} | |
>>> G.add_edge(2, 2) | |
>>> G[2][1] is G[2][2] | |
True | |
""" | |
_adj = _CachedPropertyResetterAdjAndSucc() # type: ignore[assignment] | |
_succ = _adj # type: ignore[has-type] | |
_pred = _CachedPropertyResetterPred() | |
def __init__(self, incoming_graph_data=None, **attr): | |
"""Initialize a graph with edges, name, or graph attributes. | |
Parameters | |
---------- | |
incoming_graph_data : input graph (optional, default: None) | |
Data to initialize graph. If None (default) an empty | |
graph is created. The data can be an edge list, or any | |
NetworkX graph object. If the corresponding optional Python | |
packages are installed the data can also be a 2D NumPy array, a | |
SciPy sparse array, or a PyGraphviz graph. | |
attr : keyword arguments, optional (default= no attributes) | |
Attributes to add to graph as key=value pairs. | |
See Also | |
-------- | |
convert | |
Examples | |
-------- | |
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G = nx.Graph(name="my graph") | |
>>> e = [(1, 2), (2, 3), (3, 4)] # list of edges | |
>>> G = nx.Graph(e) | |
Arbitrary graph attribute pairs (key=value) may be assigned | |
>>> G = nx.Graph(e, day="Friday") | |
>>> G.graph | |
{'day': 'Friday'} | |
""" | |
self.graph = self.graph_attr_dict_factory() # dictionary for graph attributes | |
self._node = self.node_dict_factory() # dictionary for node attr | |
# We store two adjacency lists: | |
# the predecessors of node n are stored in the dict self._pred | |
# the successors of node n are stored in the dict self._succ=self._adj | |
self._adj = self.adjlist_outer_dict_factory() # empty adjacency dict successor | |
self._pred = self.adjlist_outer_dict_factory() # predecessor | |
# Note: self._succ = self._adj # successor | |
# attempt to load graph with data | |
if incoming_graph_data is not None: | |
convert.to_networkx_graph(incoming_graph_data, create_using=self) | |
# load graph attributes (must be after convert) | |
self.graph.update(attr) | |
def adj(self): | |
"""Graph adjacency object holding the neighbors of each node. | |
This object is a read-only dict-like structure with node keys | |
and neighbor-dict values. The neighbor-dict is keyed by neighbor | |
to the edge-data-dict. So `G.adj[3][2]['color'] = 'blue'` sets | |
the color of the edge `(3, 2)` to `"blue"`. | |
Iterating over G.adj behaves like a dict. Useful idioms include | |
`for nbr, datadict in G.adj[n].items():`. | |
The neighbor information is also provided by subscripting the graph. | |
So `for nbr, foovalue in G[node].data('foo', default=1):` works. | |
For directed graphs, `G.adj` holds outgoing (successor) info. | |
""" | |
return AdjacencyView(self._succ) | |
def succ(self): | |
"""Graph adjacency object holding the successors of each node. | |
This object is a read-only dict-like structure with node keys | |
and neighbor-dict values. The neighbor-dict is keyed by neighbor | |
to the edge-data-dict. So `G.succ[3][2]['color'] = 'blue'` sets | |
the color of the edge `(3, 2)` to `"blue"`. | |
Iterating over G.succ behaves like a dict. Useful idioms include | |
`for nbr, datadict in G.succ[n].items():`. A data-view not provided | |
by dicts also exists: `for nbr, foovalue in G.succ[node].data('foo'):` | |
and a default can be set via a `default` argument to the `data` method. | |
The neighbor information is also provided by subscripting the graph. | |
So `for nbr, foovalue in G[node].data('foo', default=1):` works. | |
For directed graphs, `G.adj` is identical to `G.succ`. | |
""" | |
return AdjacencyView(self._succ) | |
def pred(self): | |
"""Graph adjacency object holding the predecessors of each node. | |
This object is a read-only dict-like structure with node keys | |
and neighbor-dict values. The neighbor-dict is keyed by neighbor | |
to the edge-data-dict. So `G.pred[2][3]['color'] = 'blue'` sets | |
the color of the edge `(3, 2)` to `"blue"`. | |
Iterating over G.pred behaves like a dict. Useful idioms include | |
`for nbr, datadict in G.pred[n].items():`. A data-view not provided | |
by dicts also exists: `for nbr, foovalue in G.pred[node].data('foo'):` | |
A default can be set via a `default` argument to the `data` method. | |
""" | |
return AdjacencyView(self._pred) | |
def add_node(self, node_for_adding, **attr): | |
"""Add a single node `node_for_adding` and update node attributes. | |
Parameters | |
---------- | |
node_for_adding : node | |
A node can be any hashable Python object except None. | |
attr : keyword arguments, optional | |
Set or change node attributes using key=value. | |
See Also | |
-------- | |
add_nodes_from | |
Examples | |
-------- | |
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G.add_node(1) | |
>>> G.add_node("Hello") | |
>>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)]) | |
>>> G.add_node(K3) | |
>>> G.number_of_nodes() | |
3 | |
Use keywords set/change node attributes: | |
>>> G.add_node(1, size=10) | |
>>> G.add_node(3, weight=0.4, UTM=("13S", 382871, 3972649)) | |
Notes | |
----- | |
A hashable object is one that can be used as a key in a Python | |
dictionary. This includes strings, numbers, tuples of strings | |
and numbers, etc. | |
On many platforms hashable items also include mutables such as | |
NetworkX Graphs, though one should be careful that the hash | |
doesn't change on mutables. | |
""" | |
if node_for_adding not in self._succ: | |
if node_for_adding is None: | |
raise ValueError("None cannot be a node") | |
self._succ[node_for_adding] = self.adjlist_inner_dict_factory() | |
self._pred[node_for_adding] = self.adjlist_inner_dict_factory() | |
attr_dict = self._node[node_for_adding] = self.node_attr_dict_factory() | |
attr_dict.update(attr) | |
else: # update attr even if node already exists | |
self._node[node_for_adding].update(attr) | |
def add_nodes_from(self, nodes_for_adding, **attr): | |
"""Add multiple nodes. | |
Parameters | |
---------- | |
nodes_for_adding : iterable container | |
A container of nodes (list, dict, set, etc.). | |
OR | |
A container of (node, attribute dict) tuples. | |
Node attributes are updated using the attribute dict. | |
attr : keyword arguments, optional (default= no attributes) | |
Update attributes for all nodes in nodes. | |
Node attributes specified in nodes as a tuple take | |
precedence over attributes specified via keyword arguments. | |
See Also | |
-------- | |
add_node | |
Notes | |
----- | |
When adding nodes from an iterator over the graph you are changing, | |
a `RuntimeError` can be raised with message: | |
`RuntimeError: dictionary changed size during iteration`. This | |
happens when the graph's underlying dictionary is modified during | |
iteration. To avoid this error, evaluate the iterator into a separate | |
object, e.g. by using `list(iterator_of_nodes)`, and pass this | |
object to `G.add_nodes_from`. | |
Examples | |
-------- | |
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G.add_nodes_from("Hello") | |
>>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)]) | |
>>> G.add_nodes_from(K3) | |
>>> sorted(G.nodes(), key=str) | |
[0, 1, 2, 'H', 'e', 'l', 'o'] | |
Use keywords to update specific node attributes for every node. | |
>>> G.add_nodes_from([1, 2], size=10) | |
>>> G.add_nodes_from([3, 4], weight=0.4) | |
Use (node, attrdict) tuples to update attributes for specific nodes. | |
>>> G.add_nodes_from([(1, dict(size=11)), (2, {"color": "blue"})]) | |
>>> G.nodes[1]["size"] | |
11 | |
>>> H = nx.Graph() | |
>>> H.add_nodes_from(G.nodes(data=True)) | |
>>> H.nodes[1]["size"] | |
11 | |
Evaluate an iterator over a graph if using it to modify the same graph | |
>>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)]) | |
>>> # wrong way - will raise RuntimeError | |
>>> # G.add_nodes_from(n + 1 for n in G.nodes) | |
>>> # correct way | |
>>> G.add_nodes_from(list(n + 1 for n in G.nodes)) | |
""" | |
for n in nodes_for_adding: | |
try: | |
newnode = n not in self._node | |
newdict = attr | |
except TypeError: | |
n, ndict = n | |
newnode = n not in self._node | |
newdict = attr.copy() | |
newdict.update(ndict) | |
if newnode: | |
if n is None: | |
raise ValueError("None cannot be a node") | |
self._succ[n] = self.adjlist_inner_dict_factory() | |
self._pred[n] = self.adjlist_inner_dict_factory() | |
self._node[n] = self.node_attr_dict_factory() | |
self._node[n].update(newdict) | |
def remove_node(self, n): | |
"""Remove node n. | |
Removes the node n and all adjacent edges. | |
Attempting to remove a nonexistent node will raise an exception. | |
Parameters | |
---------- | |
n : node | |
A node in the graph | |
Raises | |
------ | |
NetworkXError | |
If n is not in the graph. | |
See Also | |
-------- | |
remove_nodes_from | |
Examples | |
-------- | |
>>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> list(G.edges) | |
[(0, 1), (1, 2)] | |
>>> G.remove_node(1) | |
>>> list(G.edges) | |
[] | |
""" | |
try: | |
nbrs = self._succ[n] | |
del self._node[n] | |
except KeyError as err: # NetworkXError if n not in self | |
raise NetworkXError(f"The node {n} is not in the digraph.") from err | |
for u in nbrs: | |
del self._pred[u][n] # remove all edges n-u in digraph | |
del self._succ[n] # remove node from succ | |
for u in self._pred[n]: | |
del self._succ[u][n] # remove all edges n-u in digraph | |
del self._pred[n] # remove node from pred | |
def remove_nodes_from(self, nodes): | |
"""Remove multiple nodes. | |
Parameters | |
---------- | |
nodes : iterable container | |
A container of nodes (list, dict, set, etc.). If a node | |
in the container is not in the graph it is silently ignored. | |
See Also | |
-------- | |
remove_node | |
Notes | |
----- | |
When removing nodes from an iterator over the graph you are changing, | |
a `RuntimeError` will be raised with message: | |
`RuntimeError: dictionary changed size during iteration`. This | |
happens when the graph's underlying dictionary is modified during | |
iteration. To avoid this error, evaluate the iterator into a separate | |
object, e.g. by using `list(iterator_of_nodes)`, and pass this | |
object to `G.remove_nodes_from`. | |
Examples | |
-------- | |
>>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> e = list(G.nodes) | |
>>> e | |
[0, 1, 2] | |
>>> G.remove_nodes_from(e) | |
>>> list(G.nodes) | |
[] | |
Evaluate an iterator over a graph if using it to modify the same graph | |
>>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)]) | |
>>> # this command will fail, as the graph's dict is modified during iteration | |
>>> # G.remove_nodes_from(n for n in G.nodes if n < 2) | |
>>> # this command will work, since the dictionary underlying graph is not modified | |
>>> G.remove_nodes_from(list(n for n in G.nodes if n < 2)) | |
""" | |
for n in nodes: | |
try: | |
succs = self._succ[n] | |
del self._node[n] | |
for u in succs: | |
del self._pred[u][n] # remove all edges n-u in digraph | |
del self._succ[n] # now remove node | |
for u in self._pred[n]: | |
del self._succ[u][n] # remove all edges n-u in digraph | |
del self._pred[n] # now remove node | |
except KeyError: | |
pass # silent failure on remove | |
def add_edge(self, u_of_edge, v_of_edge, **attr): | |
"""Add an edge between u and v. | |
The nodes u and v will be automatically added if they are | |
not already in the graph. | |
Edge attributes can be specified with keywords or by directly | |
accessing the edge's attribute dictionary. See examples below. | |
Parameters | |
---------- | |
u_of_edge, v_of_edge : nodes | |
Nodes can be, for example, strings or numbers. | |
Nodes must be hashable (and not None) Python objects. | |
attr : keyword arguments, optional | |
Edge data (or labels or objects) can be assigned using | |
keyword arguments. | |
See Also | |
-------- | |
add_edges_from : add a collection of edges | |
Notes | |
----- | |
Adding an edge that already exists updates the edge data. | |
Many NetworkX algorithms designed for weighted graphs use | |
an edge attribute (by default `weight`) to hold a numerical value. | |
Examples | |
-------- | |
The following all add the edge e=(1, 2) to graph G: | |
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> e = (1, 2) | |
>>> G.add_edge(1, 2) # explicit two-node form | |
>>> G.add_edge(*e) # single edge as tuple of two nodes | |
>>> G.add_edges_from([(1, 2)]) # add edges from iterable container | |
Associate data to edges using keywords: | |
>>> G.add_edge(1, 2, weight=3) | |
>>> G.add_edge(1, 3, weight=7, capacity=15, length=342.7) | |
For non-string attribute keys, use subscript notation. | |
>>> G.add_edge(1, 2) | |
>>> G[1][2].update({0: 5}) | |
>>> G.edges[1, 2].update({0: 5}) | |
""" | |
u, v = u_of_edge, v_of_edge | |
# add nodes | |
if u not in self._succ: | |
if u is None: | |
raise ValueError("None cannot be a node") | |
self._succ[u] = self.adjlist_inner_dict_factory() | |
self._pred[u] = self.adjlist_inner_dict_factory() | |
self._node[u] = self.node_attr_dict_factory() | |
if v not in self._succ: | |
if v is None: | |
raise ValueError("None cannot be a node") | |
self._succ[v] = self.adjlist_inner_dict_factory() | |
self._pred[v] = self.adjlist_inner_dict_factory() | |
self._node[v] = self.node_attr_dict_factory() | |
# add the edge | |
datadict = self._adj[u].get(v, self.edge_attr_dict_factory()) | |
datadict.update(attr) | |
self._succ[u][v] = datadict | |
self._pred[v][u] = datadict | |
def add_edges_from(self, ebunch_to_add, **attr): | |
"""Add all the edges in ebunch_to_add. | |
Parameters | |
---------- | |
ebunch_to_add : container of edges | |
Each edge given in the container will be added to the | |
graph. The edges must be given as 2-tuples (u, v) or | |
3-tuples (u, v, d) where d is a dictionary containing edge data. | |
attr : keyword arguments, optional | |
Edge data (or labels or objects) can be assigned using | |
keyword arguments. | |
See Also | |
-------- | |
add_edge : add a single edge | |
add_weighted_edges_from : convenient way to add weighted edges | |
Notes | |
----- | |
Adding the same edge twice has no effect but any edge data | |
will be updated when each duplicate edge is added. | |
Edge attributes specified in an ebunch take precedence over | |
attributes specified via keyword arguments. | |
When adding edges from an iterator over the graph you are changing, | |
a `RuntimeError` can be raised with message: | |
`RuntimeError: dictionary changed size during iteration`. This | |
happens when the graph's underlying dictionary is modified during | |
iteration. To avoid this error, evaluate the iterator into a separate | |
object, e.g. by using `list(iterator_of_edges)`, and pass this | |
object to `G.add_edges_from`. | |
Examples | |
-------- | |
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples | |
>>> e = zip(range(0, 3), range(1, 4)) | |
>>> G.add_edges_from(e) # Add the path graph 0-1-2-3 | |
Associate data to edges | |
>>> G.add_edges_from([(1, 2), (2, 3)], weight=3) | |
>>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898") | |
Evaluate an iterator over a graph if using it to modify the same graph | |
>>> G = nx.DiGraph([(1, 2), (2, 3), (3, 4)]) | |
>>> # Grow graph by one new node, adding edges to all existing nodes. | |
>>> # wrong way - will raise RuntimeError | |
>>> # G.add_edges_from(((5, n) for n in G.nodes)) | |
>>> # right way - note that there will be no self-edge for node 5 | |
>>> G.add_edges_from(list((5, n) for n in G.nodes)) | |
""" | |
for e in ebunch_to_add: | |
ne = len(e) | |
if ne == 3: | |
u, v, dd = e | |
elif ne == 2: | |
u, v = e | |
dd = {} | |
else: | |
raise NetworkXError(f"Edge tuple {e} must be a 2-tuple or 3-tuple.") | |
if u not in self._succ: | |
if u is None: | |
raise ValueError("None cannot be a node") | |
self._succ[u] = self.adjlist_inner_dict_factory() | |
self._pred[u] = self.adjlist_inner_dict_factory() | |
self._node[u] = self.node_attr_dict_factory() | |
if v not in self._succ: | |
if v is None: | |
raise ValueError("None cannot be a node") | |
self._succ[v] = self.adjlist_inner_dict_factory() | |
self._pred[v] = self.adjlist_inner_dict_factory() | |
self._node[v] = self.node_attr_dict_factory() | |
datadict = self._adj[u].get(v, self.edge_attr_dict_factory()) | |
datadict.update(attr) | |
datadict.update(dd) | |
self._succ[u][v] = datadict | |
self._pred[v][u] = datadict | |
def remove_edge(self, u, v): | |
"""Remove the edge between u and v. | |
Parameters | |
---------- | |
u, v : nodes | |
Remove the edge between nodes u and v. | |
Raises | |
------ | |
NetworkXError | |
If there is not an edge between u and v. | |
See Also | |
-------- | |
remove_edges_from : remove a collection of edges | |
Examples | |
-------- | |
>>> G = nx.Graph() # or DiGraph, etc | |
>>> nx.add_path(G, [0, 1, 2, 3]) | |
>>> G.remove_edge(0, 1) | |
>>> e = (1, 2) | |
>>> G.remove_edge(*e) # unpacks e from an edge tuple | |
>>> e = (2, 3, {"weight": 7}) # an edge with attribute data | |
>>> G.remove_edge(*e[:2]) # select first part of edge tuple | |
""" | |
try: | |
del self._succ[u][v] | |
del self._pred[v][u] | |
except KeyError as err: | |
raise NetworkXError(f"The edge {u}-{v} not in graph.") from err | |
def remove_edges_from(self, ebunch): | |
"""Remove all edges specified in ebunch. | |
Parameters | |
---------- | |
ebunch: list or container of edge tuples | |
Each edge given in the list or container will be removed | |
from the graph. The edges can be: | |
- 2-tuples (u, v) edge between u and v. | |
- 3-tuples (u, v, k) where k is ignored. | |
See Also | |
-------- | |
remove_edge : remove a single edge | |
Notes | |
----- | |
Will fail silently if an edge in ebunch is not in the graph. | |
Examples | |
-------- | |
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> ebunch = [(1, 2), (2, 3)] | |
>>> G.remove_edges_from(ebunch) | |
""" | |
for e in ebunch: | |
u, v = e[:2] # ignore edge data | |
if u in self._succ and v in self._succ[u]: | |
del self._succ[u][v] | |
del self._pred[v][u] | |
def has_successor(self, u, v): | |
"""Returns True if node u has successor v. | |
This is true if graph has the edge u->v. | |
""" | |
return u in self._succ and v in self._succ[u] | |
def has_predecessor(self, u, v): | |
"""Returns True if node u has predecessor v. | |
This is true if graph has the edge u<-v. | |
""" | |
return u in self._pred and v in self._pred[u] | |
def successors(self, n): | |
"""Returns an iterator over successor nodes of n. | |
A successor of n is a node m such that there exists a directed | |
edge from n to m. | |
Parameters | |
---------- | |
n : node | |
A node in the graph | |
Raises | |
------ | |
NetworkXError | |
If n is not in the graph. | |
See Also | |
-------- | |
predecessors | |
Notes | |
----- | |
neighbors() and successors() are the same. | |
""" | |
try: | |
return iter(self._succ[n]) | |
except KeyError as err: | |
raise NetworkXError(f"The node {n} is not in the digraph.") from err | |
# digraph definitions | |
neighbors = successors | |
def predecessors(self, n): | |
"""Returns an iterator over predecessor nodes of n. | |
A predecessor of n is a node m such that there exists a directed | |
edge from m to n. | |
Parameters | |
---------- | |
n : node | |
A node in the graph | |
Raises | |
------ | |
NetworkXError | |
If n is not in the graph. | |
See Also | |
-------- | |
successors | |
""" | |
try: | |
return iter(self._pred[n]) | |
except KeyError as err: | |
raise NetworkXError(f"The node {n} is not in the digraph.") from err | |
def edges(self): | |
"""An OutEdgeView of the DiGraph as G.edges or G.edges(). | |
edges(self, nbunch=None, data=False, default=None) | |
The OutEdgeView provides set-like operations on the edge-tuples | |
as well as edge attribute lookup. When called, it also provides | |
an EdgeDataView object which allows control of access to edge | |
attributes (but does not provide set-like operations). | |
Hence, `G.edges[u, v]['color']` provides the value of the color | |
attribute for edge `(u, v)` while | |
`for (u, v, c) in G.edges.data('color', default='red'):` | |
iterates through all the edges yielding the color attribute | |
with default `'red'` if no color attribute exists. | |
Parameters | |
---------- | |
nbunch : single node, container, or all nodes (default= all nodes) | |
The view will only report edges from these nodes. | |
data : string or bool, optional (default=False) | |
The edge attribute returned in 3-tuple (u, v, ddict[data]). | |
If True, return edge attribute dict in 3-tuple (u, v, ddict). | |
If False, return 2-tuple (u, v). | |
default : value, optional (default=None) | |
Value used for edges that don't have the requested attribute. | |
Only relevant if data is not True or False. | |
Returns | |
------- | |
edges : OutEdgeView | |
A view of edge attributes, usually it iterates over (u, v) | |
or (u, v, d) tuples of edges, but can also be used for | |
attribute lookup as `edges[u, v]['foo']`. | |
See Also | |
-------- | |
in_edges, out_edges | |
Notes | |
----- | |
Nodes in nbunch that are not in the graph will be (quietly) ignored. | |
For directed graphs this returns the out-edges. | |
Examples | |
-------- | |
>>> G = nx.DiGraph() # or MultiDiGraph, etc | |
>>> nx.add_path(G, [0, 1, 2]) | |
>>> G.add_edge(2, 3, weight=5) | |
>>> [e for e in G.edges] | |
[(0, 1), (1, 2), (2, 3)] | |
>>> G.edges.data() # default data is {} (empty dict) | |
OutEdgeDataView([(0, 1, {}), (1, 2, {}), (2, 3, {'weight': 5})]) | |
>>> G.edges.data("weight", default=1) | |
OutEdgeDataView([(0, 1, 1), (1, 2, 1), (2, 3, 5)]) | |
>>> G.edges([0, 2]) # only edges originating from these nodes | |
OutEdgeDataView([(0, 1), (2, 3)]) | |
>>> G.edges(0) # only edges from node 0 | |
OutEdgeDataView([(0, 1)]) | |
""" | |
return OutEdgeView(self) | |
# alias out_edges to edges | |
def out_edges(self): | |
return OutEdgeView(self) | |
out_edges.__doc__ = edges.__doc__ | |
def in_edges(self): | |
"""A view of the in edges of the graph as G.in_edges or G.in_edges(). | |
in_edges(self, nbunch=None, data=False, default=None): | |
Parameters | |
---------- | |
nbunch : single node, container, or all nodes (default= all nodes) | |
The view will only report edges incident to these nodes. | |
data : string or bool, optional (default=False) | |
The edge attribute returned in 3-tuple (u, v, ddict[data]). | |
If True, return edge attribute dict in 3-tuple (u, v, ddict). | |
If False, return 2-tuple (u, v). | |
default : value, optional (default=None) | |
Value used for edges that don't have the requested attribute. | |
Only relevant if data is not True or False. | |
Returns | |
------- | |
in_edges : InEdgeView or InEdgeDataView | |
A view of edge attributes, usually it iterates over (u, v) | |
or (u, v, d) tuples of edges, but can also be used for | |
attribute lookup as `edges[u, v]['foo']`. | |
Examples | |
-------- | |
>>> G = nx.DiGraph() | |
>>> G.add_edge(1, 2, color='blue') | |
>>> G.in_edges() | |
InEdgeView([(1, 2)]) | |
>>> G.in_edges(nbunch=2) | |
InEdgeDataView([(1, 2)]) | |
See Also | |
-------- | |
edges | |
""" | |
return InEdgeView(self) | |
def degree(self): | |
"""A DegreeView for the Graph as G.degree or G.degree(). | |
The node degree is the number of edges adjacent to the node. | |
The weighted node degree is the sum of the edge weights for | |
edges incident to that node. | |
This object provides an iterator for (node, degree) as well as | |
lookup for the degree for a single node. | |
Parameters | |
---------- | |
nbunch : single node, container, or all nodes (default= all nodes) | |
The view will only report edges incident to these nodes. | |
weight : string or None, optional (default=None) | |
The name of an edge attribute that holds the numerical value used | |
as a weight. If None, then each edge has weight 1. | |
The degree is the sum of the edge weights adjacent to the node. | |
Returns | |
------- | |
DiDegreeView or int | |
If multiple nodes are requested (the default), returns a `DiDegreeView` | |
mapping nodes to their degree. | |
If a single node is requested, returns the degree of the node as an integer. | |
See Also | |
-------- | |
in_degree, out_degree | |
Examples | |
-------- | |
>>> G = nx.DiGraph() # or MultiDiGraph | |
>>> nx.add_path(G, [0, 1, 2, 3]) | |
>>> G.degree(0) # node 0 with degree 1 | |
1 | |
>>> list(G.degree([0, 1, 2])) | |
[(0, 1), (1, 2), (2, 2)] | |
""" | |
return DiDegreeView(self) | |
def in_degree(self): | |
"""An InDegreeView for (node, in_degree) or in_degree for single node. | |
The node in_degree is the number of edges pointing to the node. | |
The weighted node degree is the sum of the edge weights for | |
edges incident to that node. | |
This object provides an iteration over (node, in_degree) as well as | |
lookup for the degree for a single node. | |
Parameters | |
---------- | |
nbunch : single node, container, or all nodes (default= all nodes) | |
The view will only report edges incident to these nodes. | |
weight : string or None, optional (default=None) | |
The name of an edge attribute that holds the numerical value used | |
as a weight. If None, then each edge has weight 1. | |
The degree is the sum of the edge weights adjacent to the node. | |
Returns | |
------- | |
If a single node is requested | |
deg : int | |
In-degree of the node | |
OR if multiple nodes are requested | |
nd_iter : iterator | |
The iterator returns two-tuples of (node, in-degree). | |
See Also | |
-------- | |
degree, out_degree | |
Examples | |
-------- | |
>>> G = nx.DiGraph() | |
>>> nx.add_path(G, [0, 1, 2, 3]) | |
>>> G.in_degree(0) # node 0 with degree 0 | |
0 | |
>>> list(G.in_degree([0, 1, 2])) | |
[(0, 0), (1, 1), (2, 1)] | |
""" | |
return InDegreeView(self) | |
def out_degree(self): | |
"""An OutDegreeView for (node, out_degree) | |
The node out_degree is the number of edges pointing out of the node. | |
The weighted node degree is the sum of the edge weights for | |
edges incident to that node. | |
This object provides an iterator over (node, out_degree) as well as | |
lookup for the degree for a single node. | |
Parameters | |
---------- | |
nbunch : single node, container, or all nodes (default= all nodes) | |
The view will only report edges incident to these nodes. | |
weight : string or None, optional (default=None) | |
The name of an edge attribute that holds the numerical value used | |
as a weight. If None, then each edge has weight 1. | |
The degree is the sum of the edge weights adjacent to the node. | |
Returns | |
------- | |
If a single node is requested | |
deg : int | |
Out-degree of the node | |
OR if multiple nodes are requested | |
nd_iter : iterator | |
The iterator returns two-tuples of (node, out-degree). | |
See Also | |
-------- | |
degree, in_degree | |
Examples | |
-------- | |
>>> G = nx.DiGraph() | |
>>> nx.add_path(G, [0, 1, 2, 3]) | |
>>> G.out_degree(0) # node 0 with degree 1 | |
1 | |
>>> list(G.out_degree([0, 1, 2])) | |
[(0, 1), (1, 1), (2, 1)] | |
""" | |
return OutDegreeView(self) | |
def clear(self): | |
"""Remove all nodes and edges from the graph. | |
This also removes the name, and all graph, node, and edge attributes. | |
Examples | |
-------- | |
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G.clear() | |
>>> list(G.nodes) | |
[] | |
>>> list(G.edges) | |
[] | |
""" | |
self._succ.clear() | |
self._pred.clear() | |
self._node.clear() | |
self.graph.clear() | |
def clear_edges(self): | |
"""Remove all edges from the graph without altering nodes. | |
Examples | |
-------- | |
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc | |
>>> G.clear_edges() | |
>>> list(G.nodes) | |
[0, 1, 2, 3] | |
>>> list(G.edges) | |
[] | |
""" | |
for predecessor_dict in self._pred.values(): | |
predecessor_dict.clear() | |
for successor_dict in self._succ.values(): | |
successor_dict.clear() | |
def is_multigraph(self): | |
"""Returns True if graph is a multigraph, False otherwise.""" | |
return False | |
def is_directed(self): | |
"""Returns True if graph is directed, False otherwise.""" | |
return True | |
def to_undirected(self, reciprocal=False, as_view=False): | |
"""Returns an undirected representation of the digraph. | |
Parameters | |
---------- | |
reciprocal : bool (optional) | |
If True only keep edges that appear in both directions | |
in the original digraph. | |
as_view : bool (optional, default=False) | |
If True return an undirected view of the original directed graph. | |
Returns | |
------- | |
G : Graph | |
An undirected graph with the same name and nodes and | |
with edge (u, v, data) if either (u, v, data) or (v, u, data) | |
is in the digraph. If both edges exist in digraph and | |
their edge data is different, only one edge is created | |
with an arbitrary choice of which edge data to use. | |
You must check and correct for this manually if desired. | |
See Also | |
-------- | |
Graph, copy, add_edge, add_edges_from | |
Notes | |
----- | |
If edges in both directions (u, v) and (v, u) exist in the | |
graph, attributes for the new undirected edge will be a combination of | |
the attributes of the directed edges. The edge data is updated | |
in the (arbitrary) order that the edges are encountered. For | |
more customized control of the edge attributes use add_edge(). | |
This returns a "deepcopy" of the edge, node, and | |
graph attributes which attempts to completely copy | |
all of the data and references. | |
This is in contrast to the similar G=DiGraph(D) which returns a | |
shallow copy of the data. | |
See the Python copy module for more information on shallow | |
and deep copies, https://docs.python.org/3/library/copy.html. | |
Warning: If you have subclassed DiGraph to use dict-like objects | |
in the data structure, those changes do not transfer to the | |
Graph created by this method. | |
Examples | |
-------- | |
>>> G = nx.path_graph(2) # or MultiGraph, etc | |
>>> H = G.to_directed() | |
>>> list(H.edges) | |
[(0, 1), (1, 0)] | |
>>> G2 = H.to_undirected() | |
>>> list(G2.edges) | |
[(0, 1)] | |
""" | |
graph_class = self.to_undirected_class() | |
if as_view is True: | |
return nx.graphviews.generic_graph_view(self, graph_class) | |
# deepcopy when not a view | |
G = graph_class() | |
G.graph.update(deepcopy(self.graph)) | |
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items()) | |
if reciprocal is True: | |
G.add_edges_from( | |
(u, v, deepcopy(d)) | |
for u, nbrs in self._adj.items() | |
for v, d in nbrs.items() | |
if v in self._pred[u] | |
) | |
else: | |
G.add_edges_from( | |
(u, v, deepcopy(d)) | |
for u, nbrs in self._adj.items() | |
for v, d in nbrs.items() | |
) | |
return G | |
def reverse(self, copy=True): | |
"""Returns the reverse of the graph. | |
The reverse is a graph with the same nodes and edges | |
but with the directions of the edges reversed. | |
Parameters | |
---------- | |
copy : bool optional (default=True) | |
If True, return a new DiGraph holding the reversed edges. | |
If False, the reverse graph is created using a view of | |
the original graph. | |
""" | |
if copy: | |
H = self.__class__() | |
H.graph.update(deepcopy(self.graph)) | |
H.add_nodes_from((n, deepcopy(d)) for n, d in self.nodes.items()) | |
H.add_edges_from((v, u, deepcopy(d)) for u, v, d in self.edges(data=True)) | |
return H | |
return nx.reverse_view(self) | |