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"""View of Graphs as SubGraph, Reverse, Directed, Undirected. | |
In some algorithms it is convenient to temporarily morph | |
a graph to exclude some nodes or edges. It should be better | |
to do that via a view than to remove and then re-add. | |
In other algorithms it is convenient to temporarily morph | |
a graph to reverse directed edges, or treat a directed graph | |
as undirected, etc. This module provides those graph views. | |
The resulting views are essentially read-only graphs that | |
report data from the original graph object. We provide an | |
attribute G._graph which points to the underlying graph object. | |
Note: Since graphviews look like graphs, one can end up with | |
view-of-view-of-view chains. Be careful with chains because | |
they become very slow with about 15 nested views. | |
For the common simple case of node induced subgraphs created | |
from the graph class, we short-cut the chain by returning a | |
subgraph of the original graph directly rather than a subgraph | |
of a subgraph. We are careful not to disrupt any edge filter in | |
the middle subgraph. In general, determining how to short-cut | |
the chain is tricky and much harder with restricted_views than | |
with induced subgraphs. | |
Often it is easiest to use .copy() to avoid chains. | |
""" | |
import networkx as nx | |
from networkx.classes.coreviews import ( | |
FilterAdjacency, | |
FilterAtlas, | |
FilterMultiAdjacency, | |
UnionAdjacency, | |
UnionMultiAdjacency, | |
) | |
from networkx.classes.filters import no_filter | |
from networkx.exception import NetworkXError | |
from networkx.utils import deprecate_positional_args, not_implemented_for | |
__all__ = ["generic_graph_view", "subgraph_view", "reverse_view"] | |
def generic_graph_view(G, create_using=None): | |
"""Returns a read-only view of `G`. | |
The graph `G` and its attributes are not copied but viewed through the new graph object | |
of the same class as `G` (or of the class specified in `create_using`). | |
Parameters | |
---------- | |
G : graph | |
A directed/undirected graph/multigraph. | |
create_using : NetworkX graph constructor, optional (default=None) | |
Graph type to create. If graph instance, then cleared before populated. | |
If `None`, then the appropriate Graph type is inferred from `G`. | |
Returns | |
------- | |
newG : graph | |
A view of the input graph `G` and its attributes as viewed through | |
the `create_using` class. | |
Raises | |
------ | |
NetworkXError | |
If `G` is a multigraph (or multidigraph) but `create_using` is not, or vice versa. | |
Notes | |
----- | |
The returned graph view is read-only (cannot modify the graph). | |
Yet the view reflects any changes in `G`. The intent is to mimic dict views. | |
Examples | |
-------- | |
>>> G = nx.Graph() | |
>>> G.add_edge(1, 2, weight=0.3) | |
>>> G.add_edge(2, 3, weight=0.5) | |
>>> G.edges(data=True) | |
EdgeDataView([(1, 2, {'weight': 0.3}), (2, 3, {'weight': 0.5})]) | |
The view exposes the attributes from the original graph. | |
>>> viewG = nx.graphviews.generic_graph_view(G) | |
>>> viewG.edges(data=True) | |
EdgeDataView([(1, 2, {'weight': 0.3}), (2, 3, {'weight': 0.5})]) | |
Changes to `G` are reflected in `viewG`. | |
>>> G.remove_edge(2, 3) | |
>>> G.edges(data=True) | |
EdgeDataView([(1, 2, {'weight': 0.3})]) | |
>>> viewG.edges(data=True) | |
EdgeDataView([(1, 2, {'weight': 0.3})]) | |
We can change the graph type with the `create_using` parameter. | |
>>> type(G) | |
<class 'networkx.classes.graph.Graph'> | |
>>> viewDG = nx.graphviews.generic_graph_view(G, create_using=nx.DiGraph) | |
>>> type(viewDG) | |
<class 'networkx.classes.digraph.DiGraph'> | |
""" | |
if create_using is None: | |
newG = G.__class__() | |
else: | |
newG = nx.empty_graph(0, create_using) | |
if G.is_multigraph() != newG.is_multigraph(): | |
raise NetworkXError("Multigraph for G must agree with create_using") | |
newG = nx.freeze(newG) | |
# create view by assigning attributes from G | |
newG._graph = G | |
newG.graph = G.graph | |
newG._node = G._node | |
if newG.is_directed(): | |
if G.is_directed(): | |
newG._succ = G._succ | |
newG._pred = G._pred | |
# newG._adj is synced with _succ | |
else: | |
newG._succ = G._adj | |
newG._pred = G._adj | |
# newG._adj is synced with _succ | |
elif G.is_directed(): | |
if G.is_multigraph(): | |
newG._adj = UnionMultiAdjacency(G._succ, G._pred) | |
else: | |
newG._adj = UnionAdjacency(G._succ, G._pred) | |
else: | |
newG._adj = G._adj | |
return newG | |
def subgraph_view(G, *, filter_node=no_filter, filter_edge=no_filter): | |
"""View of `G` applying a filter on nodes and edges. | |
`subgraph_view` provides a read-only view of the input graph that excludes | |
nodes and edges based on the outcome of two filter functions `filter_node` | |
and `filter_edge`. | |
The `filter_node` function takes one argument --- the node --- and returns | |
`True` if the node should be included in the subgraph, and `False` if it | |
should not be included. | |
The `filter_edge` function takes two (or three arguments if `G` is a | |
multi-graph) --- the nodes describing an edge, plus the edge-key if | |
parallel edges are possible --- and returns `True` if the edge should be | |
included in the subgraph, and `False` if it should not be included. | |
Both node and edge filter functions are called on graph elements as they | |
are queried, meaning there is no up-front cost to creating the view. | |
Parameters | |
---------- | |
G : networkx.Graph | |
A directed/undirected graph/multigraph | |
filter_node : callable, optional | |
A function taking a node as input, which returns `True` if the node | |
should appear in the view. | |
filter_edge : callable, optional | |
A function taking as input the two nodes describing an edge (plus the | |
edge-key if `G` is a multi-graph), which returns `True` if the edge | |
should appear in the view. | |
Returns | |
------- | |
graph : networkx.Graph | |
A read-only graph view of the input graph. | |
Examples | |
-------- | |
>>> G = nx.path_graph(6) | |
Filter functions operate on the node, and return `True` if the node should | |
appear in the view: | |
>>> def filter_node(n1): | |
... return n1 != 5 | |
... | |
>>> view = nx.subgraph_view(G, filter_node=filter_node) | |
>>> view.nodes() | |
NodeView((0, 1, 2, 3, 4)) | |
We can use a closure pattern to filter graph elements based on additional | |
data --- for example, filtering on edge data attached to the graph: | |
>>> G[3][4]["cross_me"] = False | |
>>> def filter_edge(n1, n2): | |
... return G[n1][n2].get("cross_me", True) | |
... | |
>>> view = nx.subgraph_view(G, filter_edge=filter_edge) | |
>>> view.edges() | |
EdgeView([(0, 1), (1, 2), (2, 3), (4, 5)]) | |
>>> view = nx.subgraph_view(G, filter_node=filter_node, filter_edge=filter_edge,) | |
>>> view.nodes() | |
NodeView((0, 1, 2, 3, 4)) | |
>>> view.edges() | |
EdgeView([(0, 1), (1, 2), (2, 3)]) | |
""" | |
newG = nx.freeze(G.__class__()) | |
newG._NODE_OK = filter_node | |
newG._EDGE_OK = filter_edge | |
# create view by assigning attributes from G | |
newG._graph = G | |
newG.graph = G.graph | |
newG._node = FilterAtlas(G._node, filter_node) | |
if G.is_multigraph(): | |
Adj = FilterMultiAdjacency | |
def reverse_edge(u, v, k=None): | |
return filter_edge(v, u, k) | |
else: | |
Adj = FilterAdjacency | |
def reverse_edge(u, v, k=None): | |
return filter_edge(v, u) | |
if G.is_directed(): | |
newG._succ = Adj(G._succ, filter_node, filter_edge) | |
newG._pred = Adj(G._pred, filter_node, reverse_edge) | |
# newG._adj is synced with _succ | |
else: | |
newG._adj = Adj(G._adj, filter_node, filter_edge) | |
return newG | |
def reverse_view(G): | |
"""View of `G` with edge directions reversed | |
`reverse_view` returns a read-only view of the input graph where | |
edge directions are reversed. | |
Identical to digraph.reverse(copy=False) | |
Parameters | |
---------- | |
G : networkx.DiGraph | |
Returns | |
------- | |
graph : networkx.DiGraph | |
Examples | |
-------- | |
>>> G = nx.DiGraph() | |
>>> G.add_edge(1, 2) | |
>>> G.add_edge(2, 3) | |
>>> G.edges() | |
OutEdgeView([(1, 2), (2, 3)]) | |
>>> view = nx.reverse_view(G) | |
>>> view.edges() | |
OutEdgeView([(2, 1), (3, 2)]) | |
""" | |
newG = generic_graph_view(G) | |
newG._succ, newG._pred = G._pred, G._succ | |
# newG._adj is synced with _succ | |
return newG | |