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extern "C" { | |
/* | |
This file implements: FortranObject, array_from_pyobj, copy_ND_array | |
Author: Pearu Peterson <[email protected]> | |
$Revision: 1.52 $ | |
$Date: 2005/07/11 07:44:20 $ | |
*/ | |
int | |
F2PyDict_SetItemString(PyObject *dict, char *name, PyObject *obj) | |
{ | |
if (obj==NULL) { | |
fprintf(stderr, "Error loading %s\n", name); | |
if (PyErr_Occurred()) { | |
PyErr_Print(); | |
PyErr_Clear(); | |
} | |
return -1; | |
} | |
return PyDict_SetItemString(dict, name, obj); | |
} | |
/* | |
* Python-only fallback for thread-local callback pointers | |
*/ | |
void *F2PySwapThreadLocalCallbackPtr(char *key, void *ptr) | |
{ | |
PyObject *local_dict, *value; | |
void *prev; | |
local_dict = PyThreadState_GetDict(); | |
if (local_dict == NULL) { | |
Py_FatalError("F2PySwapThreadLocalCallbackPtr: PyThreadState_GetDict failed"); | |
} | |
value = PyDict_GetItemString(local_dict, key); | |
if (value != NULL) { | |
prev = PyLong_AsVoidPtr(value); | |
if (PyErr_Occurred()) { | |
Py_FatalError("F2PySwapThreadLocalCallbackPtr: PyLong_AsVoidPtr failed"); | |
} | |
} | |
else { | |
prev = NULL; | |
} | |
value = PyLong_FromVoidPtr((void *)ptr); | |
if (value == NULL) { | |
Py_FatalError("F2PySwapThreadLocalCallbackPtr: PyLong_FromVoidPtr failed"); | |
} | |
if (PyDict_SetItemString(local_dict, key, value) != 0) { | |
Py_FatalError("F2PySwapThreadLocalCallbackPtr: PyDict_SetItemString failed"); | |
} | |
Py_DECREF(value); | |
return prev; | |
} | |
void *F2PyGetThreadLocalCallbackPtr(char *key) | |
{ | |
PyObject *local_dict, *value; | |
void *prev; | |
local_dict = PyThreadState_GetDict(); | |
if (local_dict == NULL) { | |
Py_FatalError("F2PyGetThreadLocalCallbackPtr: PyThreadState_GetDict failed"); | |
} | |
value = PyDict_GetItemString(local_dict, key); | |
if (value != NULL) { | |
prev = PyLong_AsVoidPtr(value); | |
if (PyErr_Occurred()) { | |
Py_FatalError("F2PyGetThreadLocalCallbackPtr: PyLong_AsVoidPtr failed"); | |
} | |
} | |
else { | |
prev = NULL; | |
} | |
return prev; | |
} | |
/************************* FortranObject *******************************/ | |
typedef PyObject *(*fortranfunc)(PyObject *,PyObject *,PyObject *,void *); | |
PyObject * | |
PyFortranObject_New(FortranDataDef* defs, f2py_void_func init) { | |
int i; | |
PyFortranObject *fp = NULL; | |
PyObject *v = NULL; | |
if (init!=NULL) { /* Initialize F90 module objects */ | |
(*(init))(); | |
} | |
fp = PyObject_New(PyFortranObject, &PyFortran_Type); | |
if (fp == NULL) { | |
return NULL; | |
} | |
if ((fp->dict = PyDict_New()) == NULL) { | |
Py_DECREF(fp); | |
return NULL; | |
} | |
fp->len = 0; | |
while (defs[fp->len].name != NULL) { | |
fp->len++; | |
} | |
if (fp->len == 0) { | |
goto fail; | |
} | |
fp->defs = defs; | |
for (i=0;i<fp->len;i++) { | |
if (fp->defs[i].rank == -1) { /* Is Fortran routine */ | |
v = PyFortranObject_NewAsAttr(&(fp->defs[i])); | |
if (v==NULL) { | |
goto fail; | |
} | |
PyDict_SetItemString(fp->dict,fp->defs[i].name,v); | |
Py_XDECREF(v); | |
} else | |
if ((fp->defs[i].data)!=NULL) { /* Is Fortran variable or array (not allocatable) */ | |
if (fp->defs[i].type == NPY_STRING) { | |
int n = fp->defs[i].rank-1; | |
v = PyArray_New(&PyArray_Type, n, fp->defs[i].dims.d, | |
NPY_STRING, NULL, fp->defs[i].data, fp->defs[i].dims.d[n], | |
NPY_ARRAY_FARRAY, NULL); | |
} | |
else { | |
v = PyArray_New(&PyArray_Type, fp->defs[i].rank, fp->defs[i].dims.d, | |
fp->defs[i].type, NULL, fp->defs[i].data, 0, NPY_ARRAY_FARRAY, | |
NULL); | |
} | |
if (v==NULL) { | |
goto fail; | |
} | |
PyDict_SetItemString(fp->dict,fp->defs[i].name,v); | |
Py_XDECREF(v); | |
} | |
} | |
return (PyObject *)fp; | |
fail: | |
Py_XDECREF(fp); | |
return NULL; | |
} | |
PyObject * | |
PyFortranObject_NewAsAttr(FortranDataDef* defs) { /* used for calling F90 module routines */ | |
PyFortranObject *fp = NULL; | |
fp = PyObject_New(PyFortranObject, &PyFortran_Type); | |
if (fp == NULL) return NULL; | |
if ((fp->dict = PyDict_New())==NULL) { | |
PyObject_Del(fp); | |
return NULL; | |
} | |
fp->len = 1; | |
fp->defs = defs; | |
return (PyObject *)fp; | |
} | |
/* Fortran methods */ | |
static void | |
fortran_dealloc(PyFortranObject *fp) { | |
Py_XDECREF(fp->dict); | |
PyObject_Del(fp); | |
} | |
/* Returns number of bytes consumed from buf, or -1 on error. */ | |
static Py_ssize_t | |
format_def(char *buf, Py_ssize_t size, FortranDataDef def) | |
{ | |
char *p = buf; | |
int i, n; | |
n = PyOS_snprintf(p, size, "array(%" NPY_INTP_FMT, def.dims.d[0]); | |
if (n < 0 || n >= size) { | |
return -1; | |
} | |
p += n; | |
size -= n; | |
for (i = 1; i < def.rank; i++) { | |
n = PyOS_snprintf(p, size, ",%" NPY_INTP_FMT, def.dims.d[i]); | |
if (n < 0 || n >= size) { | |
return -1; | |
} | |
p += n; | |
size -= n; | |
} | |
if (size <= 0) { | |
return -1; | |
} | |
*p++ = ')'; | |
size--; | |
if (def.data == NULL) { | |
static const char notalloc[] = ", not allocated"; | |
if ((size_t) size < sizeof(notalloc)) { | |
return -1; | |
} | |
memcpy(p, notalloc, sizeof(notalloc)); | |
p += sizeof(notalloc); | |
size -= sizeof(notalloc); | |
} | |
return p - buf; | |
} | |
static PyObject * | |
fortran_doc(FortranDataDef def) | |
{ | |
char *buf, *p; | |
PyObject *s = NULL; | |
Py_ssize_t n, origsize, size = 100; | |
if (def.doc != NULL) { | |
size += strlen(def.doc); | |
} | |
origsize = size; | |
buf = p = (char *)PyMem_Malloc(size); | |
if (buf == NULL) { | |
return PyErr_NoMemory(); | |
} | |
if (def.rank == -1) { | |
if (def.doc) { | |
n = strlen(def.doc); | |
if (n > size) { | |
goto fail; | |
} | |
memcpy(p, def.doc, n); | |
p += n; | |
size -= n; | |
} | |
else { | |
n = PyOS_snprintf(p, size, "%s - no docs available", def.name); | |
if (n < 0 || n >= size) { | |
goto fail; | |
} | |
p += n; | |
size -= n; | |
} | |
} | |
else { | |
PyArray_Descr *d = PyArray_DescrFromType(def.type); | |
n = PyOS_snprintf(p, size, "%s : '%c'-", def.name, d->type); | |
Py_DECREF(d); | |
if (n < 0 || n >= size) { | |
goto fail; | |
} | |
p += n; | |
size -= n; | |
if (def.data == NULL) { | |
n = format_def(p, size, def); | |
if (n < 0) { | |
goto fail; | |
} | |
p += n; | |
size -= n; | |
} | |
else if (def.rank > 0) { | |
n = format_def(p, size, def); | |
if (n < 0) { | |
goto fail; | |
} | |
p += n; | |
size -= n; | |
} | |
else { | |
n = strlen("scalar"); | |
if (size < n) { | |
goto fail; | |
} | |
memcpy(p, "scalar", n); | |
p += n; | |
size -= n; | |
} | |
} | |
if (size <= 1) { | |
goto fail; | |
} | |
*p++ = '\n'; | |
size--; | |
/* p now points one beyond the last character of the string in buf */ | |
s = PyUnicode_FromStringAndSize(buf, p - buf); | |
PyMem_Free(buf); | |
return s; | |
fail: | |
fprintf(stderr, "fortranobject.c: fortran_doc: len(p)=%zd>%zd=size:" | |
" too long docstring required, increase size\n", | |
p - buf, origsize); | |
PyMem_Free(buf); | |
return NULL; | |
} | |
static FortranDataDef *save_def; /* save pointer of an allocatable array */ | |
static void set_data(char *d,npy_intp *f) { /* callback from Fortran */ | |
if (*f) /* In fortran f=allocated(d) */ | |
save_def->data = d; | |
else | |
save_def->data = NULL; | |
/* printf("set_data: d=%p,f=%d\n",d,*f); */ | |
} | |
static PyObject * | |
fortran_getattr(PyFortranObject *fp, char *name) { | |
int i,j,k,flag; | |
if (fp->dict != NULL) { | |
PyObject *v = _PyDict_GetItemStringWithError(fp->dict, name); | |
if (v == NULL && PyErr_Occurred()) { | |
return NULL; | |
} | |
else if (v != NULL) { | |
Py_INCREF(v); | |
return v; | |
} | |
} | |
for (i=0,j=1;i<fp->len && (j=strcmp(name,fp->defs[i].name));i++); | |
if (j==0) | |
if (fp->defs[i].rank!=-1) { /* F90 allocatable array */ | |
if (fp->defs[i].func==NULL) return NULL; | |
for(k=0;k<fp->defs[i].rank;++k) | |
fp->defs[i].dims.d[k]=-1; | |
save_def = &fp->defs[i]; | |
(*(fp->defs[i].func))(&fp->defs[i].rank,fp->defs[i].dims.d,set_data,&flag); | |
if (flag==2) | |
k = fp->defs[i].rank + 1; | |
else | |
k = fp->defs[i].rank; | |
if (fp->defs[i].data !=NULL) { /* array is allocated */ | |
PyObject *v = PyArray_New(&PyArray_Type, k, fp->defs[i].dims.d, | |
fp->defs[i].type, NULL, fp->defs[i].data, 0, NPY_ARRAY_FARRAY, | |
NULL); | |
if (v==NULL) return NULL; | |
/* Py_INCREF(v); */ | |
return v; | |
} else { /* array is not allocated */ | |
Py_RETURN_NONE; | |
} | |
} | |
if (strcmp(name,"__dict__")==0) { | |
Py_INCREF(fp->dict); | |
return fp->dict; | |
} | |
if (strcmp(name,"__doc__")==0) { | |
PyObject *s = PyUnicode_FromString(""), *s2, *s3; | |
for (i=0;i<fp->len;i++) { | |
s2 = fortran_doc(fp->defs[i]); | |
s3 = PyUnicode_Concat(s, s2); | |
Py_DECREF(s2); | |
Py_DECREF(s); | |
s = s3; | |
} | |
if (PyDict_SetItemString(fp->dict, name, s)) | |
return NULL; | |
return s; | |
} | |
if ((strcmp(name,"_cpointer")==0) && (fp->len==1)) { | |
PyObject *cobj = F2PyCapsule_FromVoidPtr((void *)(fp->defs[0].data),NULL); | |
if (PyDict_SetItemString(fp->dict, name, cobj)) | |
return NULL; | |
return cobj; | |
} | |
PyObject *str, *ret; | |
str = PyUnicode_FromString(name); | |
ret = PyObject_GenericGetAttr((PyObject *)fp, str); | |
Py_DECREF(str); | |
return ret; | |
} | |
static int | |
fortran_setattr(PyFortranObject *fp, char *name, PyObject *v) { | |
int i,j,flag; | |
PyArrayObject *arr = NULL; | |
for (i=0,j=1;i<fp->len && (j=strcmp(name,fp->defs[i].name));i++); | |
if (j==0) { | |
if (fp->defs[i].rank==-1) { | |
PyErr_SetString(PyExc_AttributeError,"over-writing fortran routine"); | |
return -1; | |
} | |
if (fp->defs[i].func!=NULL) { /* is allocatable array */ | |
npy_intp dims[F2PY_MAX_DIMS]; | |
int k; | |
save_def = &fp->defs[i]; | |
if (v!=Py_None) { /* set new value (reallocate if needed -- | |
see f2py generated code for more | |
details ) */ | |
for(k=0;k<fp->defs[i].rank;k++) dims[k]=-1; | |
if ((arr = array_from_pyobj(fp->defs[i].type,dims,fp->defs[i].rank,F2PY_INTENT_IN,v))==NULL) | |
return -1; | |
(*(fp->defs[i].func))(&fp->defs[i].rank,PyArray_DIMS(arr),set_data,&flag); | |
} else { /* deallocate */ | |
for(k=0;k<fp->defs[i].rank;k++) dims[k]=0; | |
(*(fp->defs[i].func))(&fp->defs[i].rank,dims,set_data,&flag); | |
for(k=0;k<fp->defs[i].rank;k++) dims[k]=-1; | |
} | |
memcpy(fp->defs[i].dims.d,dims,fp->defs[i].rank*sizeof(npy_intp)); | |
} else { /* not allocatable array */ | |
if ((arr = array_from_pyobj(fp->defs[i].type,fp->defs[i].dims.d,fp->defs[i].rank,F2PY_INTENT_IN,v))==NULL) | |
return -1; | |
} | |
if (fp->defs[i].data!=NULL) { /* copy Python object to Fortran array */ | |
npy_intp s = PyArray_MultiplyList(fp->defs[i].dims.d,PyArray_NDIM(arr)); | |
if (s==-1) | |
s = PyArray_MultiplyList(PyArray_DIMS(arr),PyArray_NDIM(arr)); | |
if (s<0 || | |
(memcpy(fp->defs[i].data,PyArray_DATA(arr),s*PyArray_ITEMSIZE(arr)))==NULL) { | |
if ((PyObject*)arr!=v) { | |
Py_DECREF(arr); | |
} | |
return -1; | |
} | |
if ((PyObject*)arr!=v) { | |
Py_DECREF(arr); | |
} | |
} else return (fp->defs[i].func==NULL?-1:0); | |
return 0; /* successful */ | |
} | |
if (fp->dict == NULL) { | |
fp->dict = PyDict_New(); | |
if (fp->dict == NULL) | |
return -1; | |
} | |
if (v == NULL) { | |
int rv = PyDict_DelItemString(fp->dict, name); | |
if (rv < 0) | |
PyErr_SetString(PyExc_AttributeError,"delete non-existing fortran attribute"); | |
return rv; | |
} | |
else | |
return PyDict_SetItemString(fp->dict, name, v); | |
} | |
static PyObject* | |
fortran_call(PyFortranObject *fp, PyObject *arg, PyObject *kw) { | |
int i = 0; | |
/* printf("fortran call | |
name=%s,func=%p,data=%p,%p\n",fp->defs[i].name, | |
fp->defs[i].func,fp->defs[i].data,&fp->defs[i].data); */ | |
if (fp->defs[i].rank==-1) {/* is Fortran routine */ | |
if (fp->defs[i].func==NULL) { | |
PyErr_Format(PyExc_RuntimeError, "no function to call"); | |
return NULL; | |
} | |
else if (fp->defs[i].data==NULL) | |
/* dummy routine */ | |
return (*((fortranfunc)(fp->defs[i].func)))((PyObject *)fp,arg,kw,NULL); | |
else | |
return (*((fortranfunc)(fp->defs[i].func)))((PyObject *)fp,arg,kw, | |
(void *)fp->defs[i].data); | |
} | |
PyErr_Format(PyExc_TypeError, "this fortran object is not callable"); | |
return NULL; | |
} | |
static PyObject * | |
fortran_repr(PyFortranObject *fp) | |
{ | |
PyObject *name = NULL, *repr = NULL; | |
name = PyObject_GetAttrString((PyObject *)fp, "__name__"); | |
PyErr_Clear(); | |
if (name != NULL && PyUnicode_Check(name)) { | |
repr = PyUnicode_FromFormat("<fortran %U>", name); | |
} | |
else { | |
repr = PyUnicode_FromString("<fortran object>"); | |
} | |
Py_XDECREF(name); | |
return repr; | |
} | |
PyTypeObject PyFortran_Type = { | |
PyVarObject_HEAD_INIT(NULL, 0) | |
.tp_name ="fortran", | |
.tp_basicsize = sizeof(PyFortranObject), | |
.tp_dealloc = (destructor)fortran_dealloc, | |
.tp_getattr = (getattrfunc)fortran_getattr, | |
.tp_setattr = (setattrfunc)fortran_setattr, | |
.tp_repr = (reprfunc)fortran_repr, | |
.tp_call = (ternaryfunc)fortran_call, | |
}; | |
/************************* f2py_report_atexit *******************************/ | |
static int passed_time = 0; | |
static int passed_counter = 0; | |
static int passed_call_time = 0; | |
static struct timeb start_time; | |
static struct timeb stop_time; | |
static struct timeb start_call_time; | |
static struct timeb stop_call_time; | |
static int cb_passed_time = 0; | |
static int cb_passed_counter = 0; | |
static int cb_passed_call_time = 0; | |
static struct timeb cb_start_time; | |
static struct timeb cb_stop_time; | |
static struct timeb cb_start_call_time; | |
static struct timeb cb_stop_call_time; | |
extern void f2py_start_clock(void) { ftime(&start_time); } | |
extern | |
void f2py_start_call_clock(void) { | |
f2py_stop_clock(); | |
ftime(&start_call_time); | |
} | |
extern | |
void f2py_stop_clock(void) { | |
ftime(&stop_time); | |
passed_time += 1000*(stop_time.time - start_time.time); | |
passed_time += stop_time.millitm - start_time.millitm; | |
} | |
extern | |
void f2py_stop_call_clock(void) { | |
ftime(&stop_call_time); | |
passed_call_time += 1000*(stop_call_time.time - start_call_time.time); | |
passed_call_time += stop_call_time.millitm - start_call_time.millitm; | |
passed_counter += 1; | |
f2py_start_clock(); | |
} | |
extern void f2py_cb_start_clock(void) { ftime(&cb_start_time); } | |
extern | |
void f2py_cb_start_call_clock(void) { | |
f2py_cb_stop_clock(); | |
ftime(&cb_start_call_time); | |
} | |
extern | |
void f2py_cb_stop_clock(void) { | |
ftime(&cb_stop_time); | |
cb_passed_time += 1000*(cb_stop_time.time - cb_start_time.time); | |
cb_passed_time += cb_stop_time.millitm - cb_start_time.millitm; | |
} | |
extern | |
void f2py_cb_stop_call_clock(void) { | |
ftime(&cb_stop_call_time); | |
cb_passed_call_time += 1000*(cb_stop_call_time.time - cb_start_call_time.time); | |
cb_passed_call_time += cb_stop_call_time.millitm - cb_start_call_time.millitm; | |
cb_passed_counter += 1; | |
f2py_cb_start_clock(); | |
} | |
static int f2py_report_on_exit_been_here = 0; | |
extern | |
void f2py_report_on_exit(int exit_flag,void *name) { | |
if (f2py_report_on_exit_been_here) { | |
fprintf(stderr," %s\n",(char*)name); | |
return; | |
} | |
f2py_report_on_exit_been_here = 1; | |
fprintf(stderr," /-----------------------\\\n"); | |
fprintf(stderr," < F2PY performance report >\n"); | |
fprintf(stderr," \\-----------------------/\n"); | |
fprintf(stderr,"Overall time spent in ...\n"); | |
fprintf(stderr,"(a) wrapped (Fortran/C) functions : %8d msec\n", | |
passed_call_time); | |
fprintf(stderr,"(b) f2py interface, %6d calls : %8d msec\n", | |
passed_counter,passed_time); | |
fprintf(stderr,"(c) call-back (Python) functions : %8d msec\n", | |
cb_passed_call_time); | |
fprintf(stderr,"(d) f2py call-back interface, %6d calls : %8d msec\n", | |
cb_passed_counter,cb_passed_time); | |
fprintf(stderr,"(e) wrapped (Fortran/C) functions (actual) : %8d msec\n\n", | |
passed_call_time-cb_passed_call_time-cb_passed_time); | |
fprintf(stderr,"Use -DF2PY_REPORT_ATEXIT_DISABLE to disable this message.\n"); | |
fprintf(stderr,"Exit status: %d\n",exit_flag); | |
fprintf(stderr,"Modules : %s\n",(char*)name); | |
} | |
/********************** report on array copy ****************************/ | |
static void f2py_report_on_array_copy(PyArrayObject* arr) { | |
const npy_intp arr_size = PyArray_Size((PyObject *)arr); | |
if (arr_size>F2PY_REPORT_ON_ARRAY_COPY) { | |
fprintf(stderr,"copied an array: size=%ld, elsize=%"NPY_INTP_FMT"\n", | |
arr_size, (npy_intp)PyArray_ITEMSIZE(arr)); | |
} | |
} | |
static void f2py_report_on_array_copy_fromany(void) { | |
fprintf(stderr,"created an array from object\n"); | |
} | |
/************************* array_from_obj *******************************/ | |
/* | |
* File: array_from_pyobj.c | |
* | |
* Description: | |
* ------------ | |
* Provides array_from_pyobj function that returns a contiguous array | |
* object with the given dimensions and required storage order, either | |
* in row-major (C) or column-major (Fortran) order. The function | |
* array_from_pyobj is very flexible about its Python object argument | |
* that can be any number, list, tuple, or array. | |
* | |
* array_from_pyobj is used in f2py generated Python extension | |
* modules. | |
* | |
* Author: Pearu Peterson <[email protected]> | |
* Created: 13-16 January 2002 | |
* $Id: fortranobject.c,v 1.52 2005/07/11 07:44:20 pearu Exp $ | |
*/ | |
static int check_and_fix_dimensions(const PyArrayObject* arr, | |
const int rank, | |
npy_intp *dims); | |
static int | |
count_negative_dimensions(const int rank, | |
const npy_intp *dims) { | |
int i=0,r=0; | |
while (i<rank) { | |
if (dims[i] < 0) ++r; | |
++i; | |
} | |
return r; | |
} | |
void dump_dims(int rank, npy_intp const* dims) { | |
int i; | |
printf("["); | |
for(i=0;i<rank;++i) { | |
printf("%3" NPY_INTP_FMT, dims[i]); | |
} | |
printf("]\n"); | |
} | |
void dump_attrs(const PyArrayObject* obj) { | |
const PyArrayObject_fields *arr = (const PyArrayObject_fields*) obj; | |
int rank = PyArray_NDIM(arr); | |
npy_intp size = PyArray_Size((PyObject *)arr); | |
printf("\trank = %d, flags = %d, size = %" NPY_INTP_FMT "\n", | |
rank,arr->flags,size); | |
printf("\tstrides = "); | |
dump_dims(rank,arr->strides); | |
printf("\tdimensions = "); | |
dump_dims(rank,arr->dimensions); | |
} | |
static int swap_arrays(PyArrayObject* obj1, PyArrayObject* obj2) { | |
PyArrayObject_fields *arr1 = (PyArrayObject_fields*) obj1, | |
*arr2 = (PyArrayObject_fields*) obj2; | |
SWAPTYPE(arr1->data,arr2->data,char*); | |
SWAPTYPE(arr1->nd,arr2->nd,int); | |
SWAPTYPE(arr1->dimensions,arr2->dimensions,npy_intp*); | |
SWAPTYPE(arr1->strides,arr2->strides,npy_intp*); | |
SWAPTYPE(arr1->base,arr2->base,PyObject*); | |
SWAPTYPE(arr1->descr,arr2->descr,PyArray_Descr*); | |
SWAPTYPE(arr1->flags,arr2->flags,int); | |
/* SWAPTYPE(arr1->weakreflist,arr2->weakreflist,PyObject*); */ | |
return 0; | |
} | |
( (PyArray_ISINTEGER(arr) && PyTypeNum_ISINTEGER(type_num)) \ | |
||(PyArray_ISFLOAT(arr) && PyTypeNum_ISFLOAT(type_num)) \ | |
||(PyArray_ISCOMPLEX(arr) && PyTypeNum_ISCOMPLEX(type_num)) \ | |
||(PyArray_ISBOOL(arr) && PyTypeNum_ISBOOL(type_num)) \ | |
) | |
extern | |
PyArrayObject* array_from_pyobj(const int type_num, | |
npy_intp *dims, | |
const int rank, | |
const int intent, | |
PyObject *obj) { | |
/* | |
* Note about reference counting | |
* ----------------------------- | |
* If the caller returns the array to Python, it must be done with | |
* Py_BuildValue("N",arr). | |
* Otherwise, if obj!=arr then the caller must call Py_DECREF(arr). | |
* | |
* Note on intent(cache,out,..) | |
* --------------------- | |
* Don't expect correct data when returning intent(cache) array. | |
* | |
*/ | |
char mess[200]; | |
PyArrayObject *arr = NULL; | |
PyArray_Descr *descr; | |
char typechar; | |
int elsize; | |
if ((intent & F2PY_INTENT_HIDE) | |
|| ((intent & F2PY_INTENT_CACHE) && (obj==Py_None)) | |
|| ((intent & F2PY_OPTIONAL) && (obj==Py_None)) | |
) { | |
/* intent(cache), optional, intent(hide) */ | |
if (count_negative_dimensions(rank,dims) > 0) { | |
int i; | |
strcpy(mess, "failed to create intent(cache|hide)|optional array" | |
"-- must have defined dimensions but got ("); | |
for(i=0;i<rank;++i) | |
sprintf(mess+strlen(mess),"%" NPY_INTP_FMT ",",dims[i]); | |
strcat(mess, ")"); | |
PyErr_SetString(PyExc_ValueError,mess); | |
return NULL; | |
} | |
arr = (PyArrayObject *) | |
PyArray_New(&PyArray_Type, rank, dims, type_num, | |
NULL,NULL,1, | |
!(intent&F2PY_INTENT_C), | |
NULL); | |
if (arr==NULL) return NULL; | |
if (!(intent & F2PY_INTENT_CACHE)) | |
PyArray_FILLWBYTE(arr, 0); | |
return arr; | |
} | |
descr = PyArray_DescrFromType(type_num); | |
/* compatibility with NPY_CHAR */ | |
if (type_num == NPY_STRING) { | |
PyArray_DESCR_REPLACE(descr); | |
if (descr == NULL) { | |
return NULL; | |
} | |
descr->elsize = 1; | |
descr->type = NPY_CHARLTR; | |
} | |
elsize = descr->elsize; | |
typechar = descr->type; | |
Py_DECREF(descr); | |
if (PyArray_Check(obj)) { | |
arr = (PyArrayObject *)obj; | |
if (intent & F2PY_INTENT_CACHE) { | |
/* intent(cache) */ | |
if (PyArray_ISONESEGMENT(arr) | |
&& PyArray_ITEMSIZE(arr)>=elsize) { | |
if (check_and_fix_dimensions(arr, rank, dims)) { | |
return NULL; | |
} | |
if (intent & F2PY_INTENT_OUT) | |
Py_INCREF(arr); | |
return arr; | |
} | |
strcpy(mess, "failed to initialize intent(cache) array"); | |
if (!PyArray_ISONESEGMENT(arr)) | |
strcat(mess, " -- input must be in one segment"); | |
if (PyArray_ITEMSIZE(arr)<elsize) | |
sprintf(mess+strlen(mess), | |
" -- expected at least elsize=%d but got %" NPY_INTP_FMT, | |
elsize, | |
(npy_intp)PyArray_ITEMSIZE(arr) | |
); | |
PyErr_SetString(PyExc_ValueError,mess); | |
return NULL; | |
} | |
/* here we have always intent(in) or intent(inout) or intent(inplace) */ | |
if (check_and_fix_dimensions(arr, rank, dims)) { | |
return NULL; | |
} | |
/* | |
printf("intent alignment=%d\n", F2PY_GET_ALIGNMENT(intent)); | |
printf("alignment check=%d\n", F2PY_CHECK_ALIGNMENT(arr, intent)); | |
int i; | |
for (i=1;i<=16;i++) | |
printf("i=%d isaligned=%d\n", i, ARRAY_ISALIGNED(arr, i)); | |
*/ | |
if ((! (intent & F2PY_INTENT_COPY)) | |
&& PyArray_ITEMSIZE(arr)==elsize | |
&& ARRAY_ISCOMPATIBLE(arr,type_num) | |
&& F2PY_CHECK_ALIGNMENT(arr, intent) | |
) { | |
if ((intent & F2PY_INTENT_C)?PyArray_ISCARRAY_RO(arr):PyArray_ISFARRAY_RO(arr)) { | |
if ((intent & F2PY_INTENT_OUT)) { | |
Py_INCREF(arr); | |
} | |
/* Returning input array */ | |
return arr; | |
} | |
} | |
if (intent & F2PY_INTENT_INOUT) { | |
strcpy(mess, "failed to initialize intent(inout) array"); | |
/* Must use PyArray_IS*ARRAY because intent(inout) requires writable input */ | |
if ((intent & F2PY_INTENT_C) && !PyArray_ISCARRAY(arr)) | |
strcat(mess, " -- input not contiguous"); | |
if (!(intent & F2PY_INTENT_C) && !PyArray_ISFARRAY(arr)) | |
strcat(mess, " -- input not fortran contiguous"); | |
if (PyArray_ITEMSIZE(arr)!=elsize) | |
sprintf(mess+strlen(mess), | |
" -- expected elsize=%d but got %" NPY_INTP_FMT, | |
elsize, | |
(npy_intp)PyArray_ITEMSIZE(arr) | |
); | |
if (!(ARRAY_ISCOMPATIBLE(arr,type_num))) | |
sprintf(mess+strlen(mess)," -- input '%c' not compatible to '%c'", | |
PyArray_DESCR(arr)->type,typechar); | |
if (!(F2PY_CHECK_ALIGNMENT(arr, intent))) | |
sprintf(mess+strlen(mess)," -- input not %d-aligned", F2PY_GET_ALIGNMENT(intent)); | |
PyErr_SetString(PyExc_ValueError,mess); | |
return NULL; | |
} | |
/* here we have always intent(in) or intent(inplace) */ | |
{ | |
PyArrayObject * retarr; | |
retarr = (PyArrayObject *) \ | |
PyArray_New(&PyArray_Type, PyArray_NDIM(arr), PyArray_DIMS(arr), type_num, | |
NULL,NULL,1, | |
!(intent&F2PY_INTENT_C), | |
NULL); | |
if (retarr==NULL) | |
return NULL; | |
F2PY_REPORT_ON_ARRAY_COPY_FROMARR; | |
if (PyArray_CopyInto(retarr, arr)) { | |
Py_DECREF(retarr); | |
return NULL; | |
} | |
if (intent & F2PY_INTENT_INPLACE) { | |
if (swap_arrays(arr,retarr)) | |
return NULL; /* XXX: set exception */ | |
Py_XDECREF(retarr); | |
if (intent & F2PY_INTENT_OUT) | |
Py_INCREF(arr); | |
} else { | |
arr = retarr; | |
} | |
} | |
return arr; | |
} | |
if ((intent & F2PY_INTENT_INOUT) || | |
(intent & F2PY_INTENT_INPLACE) || | |
(intent & F2PY_INTENT_CACHE)) { | |
PyErr_Format(PyExc_TypeError, | |
"failed to initialize intent(inout|inplace|cache) " | |
"array, input '%s' object is not an array", | |
Py_TYPE(obj)->tp_name); | |
return NULL; | |
} | |
{ | |
PyArray_Descr * descr = PyArray_DescrFromType(type_num); | |
/* compatibility with NPY_CHAR */ | |
if (type_num == NPY_STRING) { | |
PyArray_DESCR_REPLACE(descr); | |
if (descr == NULL) { | |
return NULL; | |
} | |
descr->elsize = 1; | |
descr->type = NPY_CHARLTR; | |
} | |
F2PY_REPORT_ON_ARRAY_COPY_FROMANY; | |
arr = (PyArrayObject *) \ | |
PyArray_FromAny(obj, descr, 0,0, | |
((intent & F2PY_INTENT_C)?NPY_ARRAY_CARRAY:NPY_ARRAY_FARRAY) \ | |
| NPY_ARRAY_FORCECAST, NULL); | |
if (arr==NULL) | |
return NULL; | |
if (check_and_fix_dimensions(arr, rank, dims)) { | |
return NULL; | |
} | |
return arr; | |
} | |
} | |
/*****************************************/ | |
/* Helper functions for array_from_pyobj */ | |
/*****************************************/ | |
static | |
int check_and_fix_dimensions(const PyArrayObject* arr, const int rank, npy_intp *dims) | |
{ | |
/* | |
* This function fills in blanks (that are -1's) in dims list using | |
* the dimensions from arr. It also checks that non-blank dims will | |
* match with the corresponding values in arr dimensions. | |
* | |
* Returns 0 if the function is successful. | |
* | |
* If an error condition is detected, an exception is set and 1 is returned. | |
*/ | |
const npy_intp arr_size = (PyArray_NDIM(arr))?PyArray_Size((PyObject *)arr):1; | |
dump_attrs(arr); | |
printf("check_and_fix_dimensions:init: dims="); | |
dump_dims(rank,dims); | |
if (rank > PyArray_NDIM(arr)) { /* [1,2] -> [[1],[2]]; 1 -> [[1]] */ | |
npy_intp new_size = 1; | |
int free_axe = -1; | |
int i; | |
npy_intp d; | |
/* Fill dims where -1 or 0; check dimensions; calc new_size; */ | |
for(i=0;i<PyArray_NDIM(arr);++i) { | |
d = PyArray_DIM(arr,i); | |
if (dims[i] >= 0) { | |
if (d>1 && dims[i]!=d) { | |
PyErr_Format(PyExc_ValueError, | |
"%d-th dimension must be fixed to %" | |
NPY_INTP_FMT " but got %" NPY_INTP_FMT "\n", | |
i, dims[i], d); | |
return 1; | |
} | |
if (!dims[i]) dims[i] = 1; | |
} else { | |
dims[i] = d ? d : 1; | |
} | |
new_size *= dims[i]; | |
} | |
for(i=PyArray_NDIM(arr);i<rank;++i) | |
if (dims[i]>1) { | |
PyErr_Format(PyExc_ValueError, | |
"%d-th dimension must be %" NPY_INTP_FMT | |
" but got 0 (not defined).\n", | |
i, dims[i]); | |
return 1; | |
} else if (free_axe<0) | |
free_axe = i; | |
else | |
dims[i] = 1; | |
if (free_axe>=0) { | |
dims[free_axe] = arr_size/new_size; | |
new_size *= dims[free_axe]; | |
} | |
if (new_size != arr_size) { | |
PyErr_Format(PyExc_ValueError, | |
"unexpected array size: new_size=%" NPY_INTP_FMT | |
", got array with arr_size=%" NPY_INTP_FMT | |
" (maybe too many free indices)\n", | |
new_size, arr_size); | |
return 1; | |
} | |
} else if (rank==PyArray_NDIM(arr)) { | |
npy_intp new_size = 1; | |
int i; | |
npy_intp d; | |
for (i=0; i<rank; ++i) { | |
d = PyArray_DIM(arr,i); | |
if (dims[i]>=0) { | |
if (d > 1 && d!=dims[i]) { | |
PyErr_Format(PyExc_ValueError, | |
"%d-th dimension must be fixed to %" | |
NPY_INTP_FMT " but got %" NPY_INTP_FMT "\n", | |
i, dims[i], d); | |
return 1; | |
} | |
if (!dims[i]) dims[i] = 1; | |
} else dims[i] = d; | |
new_size *= dims[i]; | |
} | |
if (new_size != arr_size) { | |
PyErr_Format(PyExc_ValueError, | |
"unexpected array size: new_size=%" NPY_INTP_FMT | |
", got array with arr_size=%" NPY_INTP_FMT "\n", | |
new_size, arr_size); | |
return 1; | |
} | |
} else { /* [[1,2]] -> [[1],[2]] */ | |
int i,j; | |
npy_intp d; | |
int effrank; | |
npy_intp size; | |
for (i=0,effrank=0;i<PyArray_NDIM(arr);++i) | |
if (PyArray_DIM(arr,i)>1) ++effrank; | |
if (dims[rank-1]>=0) | |
if (effrank>rank) { | |
PyErr_Format(PyExc_ValueError, | |
"too many axes: %d (effrank=%d), " | |
"expected rank=%d\n", | |
PyArray_NDIM(arr), effrank, rank); | |
return 1; | |
} | |
for (i=0,j=0;i<rank;++i) { | |
while (j<PyArray_NDIM(arr) && PyArray_DIM(arr,j)<2) ++j; | |
if (j>=PyArray_NDIM(arr)) d = 1; | |
else d = PyArray_DIM(arr,j++); | |
if (dims[i]>=0) { | |
if (d>1 && d!=dims[i]) { | |
PyErr_Format(PyExc_ValueError, | |
"%d-th dimension must be fixed to %" | |
NPY_INTP_FMT " but got %" NPY_INTP_FMT | |
" (real index=%d)\n", | |
i, dims[i], d, j-1); | |
return 1; | |
} | |
if (!dims[i]) dims[i] = 1; | |
} else | |
dims[i] = d; | |
} | |
for (i=rank;i<PyArray_NDIM(arr);++i) { /* [[1,2],[3,4]] -> [1,2,3,4] */ | |
while (j<PyArray_NDIM(arr) && PyArray_DIM(arr,j)<2) ++j; | |
if (j>=PyArray_NDIM(arr)) d = 1; | |
else d = PyArray_DIM(arr,j++); | |
dims[rank-1] *= d; | |
} | |
for (i=0,size=1;i<rank;++i) size *= dims[i]; | |
if (size != arr_size) { | |
char msg[200]; | |
int len; | |
snprintf(msg, sizeof(msg), | |
"unexpected array size: size=%" NPY_INTP_FMT | |
", arr_size=%" NPY_INTP_FMT | |
", rank=%d, effrank=%d, arr.nd=%d, dims=[", | |
size, arr_size, rank, effrank, PyArray_NDIM(arr)); | |
for (i = 0; i < rank; ++i) { | |
len = strlen(msg); | |
snprintf(msg + len, sizeof(msg) - len, | |
" %" NPY_INTP_FMT, dims[i]); | |
} | |
len = strlen(msg); | |
snprintf(msg + len, sizeof(msg) - len, " ], arr.dims=["); | |
for (i = 0; i < PyArray_NDIM(arr); ++i) { | |
len = strlen(msg); | |
snprintf(msg + len, sizeof(msg) - len, | |
" %" NPY_INTP_FMT, PyArray_DIM(arr, i)); | |
} | |
len = strlen(msg); | |
snprintf(msg + len, sizeof(msg) - len, " ]\n"); | |
PyErr_SetString(PyExc_ValueError, msg); | |
return 1; | |
} | |
} | |
printf("check_and_fix_dimensions:end: dims="); | |
dump_dims(rank,dims); | |
return 0; | |
} | |
/* End of file: array_from_pyobj.c */ | |
/************************* copy_ND_array *******************************/ | |
extern | |
int copy_ND_array(const PyArrayObject *arr, PyArrayObject *out) | |
{ | |
F2PY_REPORT_ON_ARRAY_COPY_FROMARR; | |
return PyArray_CopyInto(out, (PyArrayObject *)arr); | |
} | |
/*********************************************/ | |
/* Compatibility functions for Python >= 3.0 */ | |
/*********************************************/ | |
PyObject * | |
F2PyCapsule_FromVoidPtr(void *ptr, void (*dtor)(PyObject *)) | |
{ | |
PyObject *ret = PyCapsule_New(ptr, NULL, dtor); | |
if (ret == NULL) { | |
PyErr_Clear(); | |
} | |
return ret; | |
} | |
void * | |
F2PyCapsule_AsVoidPtr(PyObject *obj) | |
{ | |
void *ret = PyCapsule_GetPointer(obj, NULL); | |
if (ret == NULL) { | |
PyErr_Clear(); | |
} | |
return ret; | |
} | |
int | |
F2PyCapsule_Check(PyObject *ptr) | |
{ | |
return PyCapsule_CheckExact(ptr); | |
} | |
} | |
/************************* EOF fortranobject.c *******************************/ | |