from __future__ import annotations import contextlib import logging import math import os import pathlib import re import sys import tempfile from functools import partial from hashlib import md5 from importlib.metadata import version from typing import ( IO, TYPE_CHECKING, Any, Callable, Iterable, Iterator, Sequence, TypeVar, ) from urllib.parse import urlsplit if TYPE_CHECKING: from typing_extensions import TypeGuard from fsspec.spec import AbstractFileSystem DEFAULT_BLOCK_SIZE = 5 * 2**20 T = TypeVar("T") def infer_storage_options( urlpath: str, inherit_storage_options: dict[str, Any] | None = None ) -> dict[str, Any]: """Infer storage options from URL path and merge it with existing storage options. Parameters ---------- urlpath: str or unicode Either local absolute file path or URL (hdfs://namenode:8020/file.csv) inherit_storage_options: dict (optional) Its contents will get merged with the inferred information from the given path Returns ------- Storage options dict. Examples -------- >>> infer_storage_options('/mnt/datasets/test.csv') # doctest: +SKIP {"protocol": "file", "path", "/mnt/datasets/test.csv"} >>> infer_storage_options( ... 'hdfs://username:pwd@node:123/mnt/datasets/test.csv?q=1', ... inherit_storage_options={'extra': 'value'}, ... ) # doctest: +SKIP {"protocol": "hdfs", "username": "username", "password": "pwd", "host": "node", "port": 123, "path": "/mnt/datasets/test.csv", "url_query": "q=1", "extra": "value"} """ # Handle Windows paths including disk name in this special case if ( re.match(r"^[a-zA-Z]:[\\/]", urlpath) or re.match(r"^[a-zA-Z0-9]+://", urlpath) is None ): return {"protocol": "file", "path": urlpath} parsed_path = urlsplit(urlpath) protocol = parsed_path.scheme or "file" if parsed_path.fragment: path = "#".join([parsed_path.path, parsed_path.fragment]) else: path = parsed_path.path if protocol == "file": # Special case parsing file protocol URL on Windows according to: # https://msdn.microsoft.com/en-us/library/jj710207.aspx windows_path = re.match(r"^/([a-zA-Z])[:|]([\\/].*)$", path) if windows_path: path = "%s:%s" % windows_path.groups() if protocol in ["http", "https"]: # for HTTP, we don't want to parse, as requests will anyway return {"protocol": protocol, "path": urlpath} options: dict[str, Any] = {"protocol": protocol, "path": path} if parsed_path.netloc: # Parse `hostname` from netloc manually because `parsed_path.hostname` # lowercases the hostname which is not always desirable (e.g. in S3): # https://github.com/dask/dask/issues/1417 options["host"] = parsed_path.netloc.rsplit("@", 1)[-1].rsplit(":", 1)[0] if protocol in ("s3", "s3a", "gcs", "gs"): options["path"] = options["host"] + options["path"] else: options["host"] = options["host"] if parsed_path.port: options["port"] = parsed_path.port if parsed_path.username: options["username"] = parsed_path.username if parsed_path.password: options["password"] = parsed_path.password if parsed_path.query: options["url_query"] = parsed_path.query if parsed_path.fragment: options["url_fragment"] = parsed_path.fragment if inherit_storage_options: update_storage_options(options, inherit_storage_options) return options def update_storage_options( options: dict[str, Any], inherited: dict[str, Any] | None = None ) -> None: if not inherited: inherited = {} collisions = set(options) & set(inherited) if collisions: for collision in collisions: if options.get(collision) != inherited.get(collision): raise KeyError( f"Collision between inferred and specified storage " f"option:\n{collision}" ) options.update(inherited) # Compression extensions registered via fsspec.compression.register_compression compressions: dict[str, str] = {} def infer_compression(filename: str) -> str | None: """Infer compression, if available, from filename. Infer a named compression type, if registered and available, from filename extension. This includes builtin (gz, bz2, zip) compressions, as well as optional compressions. See fsspec.compression.register_compression. """ extension = os.path.splitext(filename)[-1].strip(".").lower() if extension in compressions: return compressions[extension] return None def build_name_function(max_int: float) -> Callable[[int], str]: """Returns a function that receives a single integer and returns it as a string padded by enough zero characters to align with maximum possible integer >>> name_f = build_name_function(57) >>> name_f(7) '07' >>> name_f(31) '31' >>> build_name_function(1000)(42) '0042' >>> build_name_function(999)(42) '042' >>> build_name_function(0)(0) '0' """ # handle corner cases max_int is 0 or exact power of 10 max_int += 1e-8 pad_length = int(math.ceil(math.log10(max_int))) def name_function(i: int) -> str: return str(i).zfill(pad_length) return name_function def seek_delimiter(file: IO[bytes], delimiter: bytes, blocksize: int) -> bool: r"""Seek current file to file start, file end, or byte after delimiter seq. Seeks file to next chunk delimiter, where chunks are defined on file start, a delimiting sequence, and file end. Use file.tell() to see location afterwards. Note that file start is a valid split, so must be at offset > 0 to seek for delimiter. Parameters ---------- file: a file delimiter: bytes a delimiter like ``b'\n'`` or message sentinel, matching file .read() type blocksize: int Number of bytes to read from the file at once. Returns ------- Returns True if a delimiter was found, False if at file start or end. """ if file.tell() == 0: # beginning-of-file, return without seek return False # Interface is for binary IO, with delimiter as bytes, but initialize last # with result of file.read to preserve compatibility with text IO. last: bytes | None = None while True: current = file.read(blocksize) if not current: # end-of-file without delimiter return False full = last + current if last else current try: if delimiter in full: i = full.index(delimiter) file.seek(file.tell() - (len(full) - i) + len(delimiter)) return True elif len(current) < blocksize: # end-of-file without delimiter return False except (OSError, ValueError): pass last = full[-len(delimiter) :] def read_block( f: IO[bytes], offset: int, length: int | None, delimiter: bytes | None = None, split_before: bool = False, ) -> bytes: """Read a block of bytes from a file Parameters ---------- f: File Open file offset: int Byte offset to start read length: int Number of bytes to read, read through end of file if None delimiter: bytes (optional) Ensure reading starts and stops at delimiter bytestring split_before: bool (optional) Start/stop read *before* delimiter bytestring. If using the ``delimiter=`` keyword argument we ensure that the read starts and stops at delimiter boundaries that follow the locations ``offset`` and ``offset + length``. If ``offset`` is zero then we start at zero, regardless of delimiter. The bytestring returned WILL include the terminating delimiter string. Examples -------- >>> from io import BytesIO # doctest: +SKIP >>> f = BytesIO(b'Alice, 100\\nBob, 200\\nCharlie, 300') # doctest: +SKIP >>> read_block(f, 0, 13) # doctest: +SKIP b'Alice, 100\\nBo' >>> read_block(f, 0, 13, delimiter=b'\\n') # doctest: +SKIP b'Alice, 100\\nBob, 200\\n' >>> read_block(f, 10, 10, delimiter=b'\\n') # doctest: +SKIP b'Bob, 200\\nCharlie, 300' """ if delimiter: f.seek(offset) found_start_delim = seek_delimiter(f, delimiter, 2**16) if length is None: return f.read() start = f.tell() length -= start - offset f.seek(start + length) found_end_delim = seek_delimiter(f, delimiter, 2**16) end = f.tell() # Adjust split location to before delimiter if seek found the # delimiter sequence, not start or end of file. if found_start_delim and split_before: start -= len(delimiter) if found_end_delim and split_before: end -= len(delimiter) offset = start length = end - start f.seek(offset) # TODO: allow length to be None and read to the end of the file? assert length is not None b = f.read(length) return b def tokenize(*args: Any, **kwargs: Any) -> str: """Deterministic token (modified from dask.base) >>> tokenize([1, 2, '3']) '9d71491b50023b06fc76928e6eddb952' >>> tokenize('Hello') == tokenize('Hello') True """ if kwargs: args += (kwargs,) try: h = md5(str(args).encode()) except ValueError: # FIPS systems: https://github.com/fsspec/filesystem_spec/issues/380 h = md5(str(args).encode(), usedforsecurity=False) return h.hexdigest() def stringify_path(filepath: str | os.PathLike[str] | pathlib.Path) -> str: """Attempt to convert a path-like object to a string. Parameters ---------- filepath: object to be converted Returns ------- filepath_str: maybe a string version of the object Notes ----- Objects supporting the fspath protocol are coerced according to its __fspath__ method. For backwards compatibility with older Python version, pathlib.Path objects are specially coerced. Any other object is passed through unchanged, which includes bytes, strings, buffers, or anything else that's not even path-like. """ if isinstance(filepath, str): return filepath elif hasattr(filepath, "__fspath__"): return filepath.__fspath__() elif hasattr(filepath, "path"): return filepath.path else: return filepath # type: ignore[return-value] def make_instance( cls: Callable[..., T], args: Sequence[Any], kwargs: dict[str, Any] ) -> T: inst = cls(*args, **kwargs) inst._determine_worker() # type: ignore[attr-defined] return inst def common_prefix(paths: Iterable[str]) -> str: """For a list of paths, find the shortest prefix common to all""" parts = [p.split("/") for p in paths] lmax = min(len(p) for p in parts) end = 0 for i in range(lmax): end = all(p[i] == parts[0][i] for p in parts) if not end: break i += end return "/".join(parts[0][:i]) def other_paths( paths: list[str], path2: str | list[str], exists: bool = False, flatten: bool = False, ) -> list[str]: """In bulk file operations, construct a new file tree from a list of files Parameters ---------- paths: list of str The input file tree path2: str or list of str Root to construct the new list in. If this is already a list of str, we just assert it has the right number of elements. exists: bool (optional) For a str destination, it is already exists (and is a dir), files should end up inside. flatten: bool (optional) Whether to flatten the input directory tree structure so that the output files are in the same directory. Returns ------- list of str """ if isinstance(path2, str): path2 = path2.rstrip("/") if flatten: path2 = ["/".join((path2, p.split("/")[-1])) for p in paths] else: cp = common_prefix(paths) if exists: cp = cp.rsplit("/", 1)[0] if not cp and all(not s.startswith("/") for s in paths): path2 = ["/".join([path2, p]) for p in paths] else: path2 = [p.replace(cp, path2, 1) for p in paths] else: assert len(paths) == len(path2) return path2 def is_exception(obj: Any) -> bool: return isinstance(obj, BaseException) def isfilelike(f: Any) -> TypeGuard[IO[bytes]]: for attr in ["read", "close", "tell"]: if not hasattr(f, attr): return False return True def get_protocol(url: str) -> str: url = stringify_path(url) parts = re.split(r"(\:\:|\://)", url, maxsplit=1) if len(parts) > 1: return parts[0] return "file" def can_be_local(path: str) -> bool: """Can the given URL be used with open_local?""" from fsspec import get_filesystem_class try: return getattr(get_filesystem_class(get_protocol(path)), "local_file", False) except (ValueError, ImportError): # not in registry or import failed return False def get_package_version_without_import(name: str) -> str | None: """For given package name, try to find the version without importing it Import and package.__version__ is still the backup here, so an import *might* happen. Returns either the version string, or None if the package or the version was not readily found. """ if name in sys.modules: mod = sys.modules[name] if hasattr(mod, "__version__"): return mod.__version__ try: return version(name) except: # noqa: E722 pass try: import importlib mod = importlib.import_module(name) return mod.__version__ except (ImportError, AttributeError): return None def setup_logging( logger: logging.Logger | None = None, logger_name: str | None = None, level: str = "DEBUG", clear: bool = True, ) -> logging.Logger: if logger is None and logger_name is None: raise ValueError("Provide either logger object or logger name") logger = logger or logging.getLogger(logger_name) handle = logging.StreamHandler() formatter = logging.Formatter( "%(asctime)s - %(name)s - %(levelname)s - %(funcName)s -- %(message)s" ) handle.setFormatter(formatter) if clear: logger.handlers.clear() logger.addHandler(handle) logger.setLevel(level) return logger def _unstrip_protocol(name: str, fs: AbstractFileSystem) -> str: return fs.unstrip_protocol(name) def mirror_from( origin_name: str, methods: Iterable[str] ) -> Callable[[type[T]], type[T]]: """Mirror attributes and methods from the given origin_name attribute of the instance to the decorated class""" def origin_getter(method: str, self: Any) -> Any: origin = getattr(self, origin_name) return getattr(origin, method) def wrapper(cls: type[T]) -> type[T]: for method in methods: wrapped_method = partial(origin_getter, method) setattr(cls, method, property(wrapped_method)) return cls return wrapper @contextlib.contextmanager def nullcontext(obj: T) -> Iterator[T]: yield obj def merge_offset_ranges( paths: list[str], starts: list[int] | int, ends: list[int] | int, max_gap: int = 0, max_block: int | None = None, sort: bool = True, ) -> tuple[list[str], list[int], list[int]]: """Merge adjacent byte-offset ranges when the inter-range gap is <= `max_gap`, and when the merged byte range does not exceed `max_block` (if specified). By default, this function will re-order the input paths and byte ranges to ensure sorted order. If the user can guarantee that the inputs are already sorted, passing `sort=False` will skip the re-ordering. """ # Check input if not isinstance(paths, list): raise TypeError if not isinstance(starts, list): starts = [starts] * len(paths) if not isinstance(ends, list): ends = [ends] * len(paths) if len(starts) != len(paths) or len(ends) != len(paths): raise ValueError # Early Return if len(starts) <= 1: return paths, starts, ends starts = [s or 0 for s in starts] # Sort by paths and then ranges if `sort=True` if sort: paths, starts, ends = ( list(v) for v in zip( *sorted( zip(paths, starts, ends), ) ) ) if paths: # Loop through the coupled `paths`, `starts`, and # `ends`, and merge adjacent blocks when appropriate new_paths = paths[:1] new_starts = starts[:1] new_ends = ends[:1] for i in range(1, len(paths)): if paths[i] == paths[i - 1] and new_ends[-1] is None: continue elif ( paths[i] != paths[i - 1] or ((starts[i] - new_ends[-1]) > max_gap) or (max_block is not None and (ends[i] - new_starts[-1]) > max_block) ): # Cannot merge with previous block. # Add new `paths`, `starts`, and `ends` elements new_paths.append(paths[i]) new_starts.append(starts[i]) new_ends.append(ends[i]) else: # Merge with previous block by updating the # last element of `ends` new_ends[-1] = ends[i] return new_paths, new_starts, new_ends # `paths` is empty. Just return input lists return paths, starts, ends def file_size(filelike: IO[bytes]) -> int: """Find length of any open read-mode file-like""" pos = filelike.tell() try: return filelike.seek(0, 2) finally: filelike.seek(pos) @contextlib.contextmanager def atomic_write(path: str, mode: str = "wb"): """ A context manager that opens a temporary file next to `path` and, on exit, replaces `path` with the temporary file, thereby updating `path` atomically. """ fd, fn = tempfile.mkstemp( dir=os.path.dirname(path), prefix=os.path.basename(path) + "-" ) try: with open(fd, mode) as fp: yield fp except BaseException: with contextlib.suppress(FileNotFoundError): os.unlink(fn) raise else: os.replace(fn, path) def _translate(pat, STAR, QUESTION_MARK): # Copied from: https://github.com/python/cpython/pull/106703. res: list[str] = [] add = res.append i, n = 0, len(pat) while i < n: c = pat[i] i = i + 1 if c == "*": # compress consecutive `*` into one if (not res) or res[-1] is not STAR: add(STAR) elif c == "?": add(QUESTION_MARK) elif c == "[": j = i if j < n and pat[j] == "!": j = j + 1 if j < n and pat[j] == "]": j = j + 1 while j < n and pat[j] != "]": j = j + 1 if j >= n: add("\\[") else: stuff = pat[i:j] if "-" not in stuff: stuff = stuff.replace("\\", r"\\") else: chunks = [] k = i + 2 if pat[i] == "!" else i + 1 while True: k = pat.find("-", k, j) if k < 0: break chunks.append(pat[i:k]) i = k + 1 k = k + 3 chunk = pat[i:j] if chunk: chunks.append(chunk) else: chunks[-1] += "-" # Remove empty ranges -- invalid in RE. for k in range(len(chunks) - 1, 0, -1): if chunks[k - 1][-1] > chunks[k][0]: chunks[k - 1] = chunks[k - 1][:-1] + chunks[k][1:] del chunks[k] # Escape backslashes and hyphens for set difference (--). # Hyphens that create ranges shouldn't be escaped. stuff = "-".join( s.replace("\\", r"\\").replace("-", r"\-") for s in chunks ) # Escape set operations (&&, ~~ and ||). stuff = re.sub(r"([&~|])", r"\\\1", stuff) i = j + 1 if not stuff: # Empty range: never match. add("(?!)") elif stuff == "!": # Negated empty range: match any character. add(".") else: if stuff[0] == "!": stuff = "^" + stuff[1:] elif stuff[0] in ("^", "["): stuff = "\\" + stuff add(f"[{stuff}]") else: add(re.escape(c)) assert i == n return res def glob_translate(pat): # Copied from: https://github.com/python/cpython/pull/106703. # The keyword parameters' values are fixed to: # recursive=True, include_hidden=True, seps=None """Translate a pathname with shell wildcards to a regular expression.""" if os.path.altsep: seps = os.path.sep + os.path.altsep else: seps = os.path.sep escaped_seps = "".join(map(re.escape, seps)) any_sep = f"[{escaped_seps}]" if len(seps) > 1 else escaped_seps not_sep = f"[^{escaped_seps}]" one_last_segment = f"{not_sep}+" one_segment = f"{one_last_segment}{any_sep}" any_segments = f"(?:.+{any_sep})?" any_last_segments = ".*" results = [] parts = re.split(any_sep, pat) last_part_idx = len(parts) - 1 for idx, part in enumerate(parts): if part == "*": results.append(one_segment if idx < last_part_idx else one_last_segment) continue if part == "**": results.append(any_segments if idx < last_part_idx else any_last_segments) continue elif "**" in part: raise ValueError( "Invalid pattern: '**' can only be an entire path component" ) if part: results.extend(_translate(part, f"{not_sep}*", not_sep)) if idx < last_part_idx: results.append(any_sep) res = "".join(results) return rf"(?s:{res})\Z"