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from dataclasses import dataclass | |
from enum import Enum | |
class Task: | |
benchmark: str | |
metric: str | |
col_name: str | |
# Select your tasks here | |
# --------------------------------------------------- | |
class Tasks(Enum): | |
# task_key in the json file, metric_key in the json file, name to display in the leaderboard | |
task0 = Task("Appendicitis", "acc", "Appendicits") | |
task1 = Task("Cholecystitis", "acc", "Cholecystitis") | |
task2 = Task("Diverticulitis", "acc", "Diverticulitis") | |
task3 = Task("Pancreatitis", "acc", "Pancreatitis") | |
NUM_FEWSHOT = 0 # Change with your few shot | |
# --------------------------------------------------- | |
# Your leaderboard name | |
TITLE = """<h1 align="center" id="space-title">MIMIC Clinical Decision Making</h1>""" | |
# What does your leaderboard evaluate? | |
INTRODUCTION_TEXT = """ | |
This leaderboard shows current scores of models on the MIMIC Clinical Decision Making (MIMIC-CDM) and MIMIC Clinical Decision Making Full Information (MIMIC-CDM-FI) datasets. The dataset can be found [here](https://physionet.org/content/mimic-iv-ext-cdm/). The code used to run the models can be found [here](https://github.com/paulhager/MIMIC-Clinical-Decision-Making-Framework). | |
""" | |
# Which evaluations are you running? how can people reproduce what you have? | |
LLM_BENCHMARKS_TEXT = f""" | |
## How it works | |
## Reproducibility | |
To reproduce our results, here is the commands you can run: | |
For MIMIC-CDM, navigate to the MIMIC-Clinical-Decision-Making-Framework repository and execute: | |
``` | |
python run.py pathology=appendicitis model=<YOUR_MODEL_NAME> | |
python run.py pathology=cholecystitis model=<YOUR_MODEL_NAME> | |
python run.py pathology=pancreatitis model=<YOUR_MODEL_NAME> | |
python run.py pathology=diverticulitis model=<YOUR_MODEL_NAME> | |
``` | |
For MIMIC-CDM-FI, navigate to the MIMIC-Clinical-Decision-Making-Framework repository and execute: | |
``` | |
python run_full_info.py pathology=appendicitis model=<YOUR_MODEL_NAME> | |
python run_full_info.py pathology=cholecystitis model=<YOUR_MODEL_NAME> | |
python run_full_info.py pathology=pancreatitis model=<YOUR_MODEL_NAME> | |
python run_full_info.py pathology=diverticulitis model=<YOUR_MODEL_NAME> | |
``` | |
""" | |
# EVALUATION_QUEUE_TEXT = """ | |
# ## Some good practices before submitting a model | |
# ### 1) Make sure you can load your model and tokenizer using AutoClasses: | |
# ```python | |
# from transformers import AutoConfig, AutoModel, AutoTokenizer | |
# config = AutoConfig.from_pretrained("your model name", revision=revision) | |
# model = AutoModel.from_pretrained("your model name", revision=revision) | |
# tokenizer = AutoTokenizer.from_pretrained("your model name", revision=revision) | |
# ``` | |
# If this step fails, follow the error messages to debug your model before submitting it. It's likely your model has been improperly uploaded. | |
# Note: make sure your model is public! | |
# Note: if your model needs `use_remote_code=True`, we do not support this option yet but we are working on adding it, stay posted! | |
# ### 2) Convert your model weights to [safetensors](https://huggingface.co/docs/safetensors/index) | |
# It's a new format for storing weights which is safer and faster to load and use. It will also allow us to add the number of parameters of your model to the `Extended Viewer`! | |
# ### 3) Make sure your model has an open license! | |
# This is a leaderboard for Open LLMs, and we'd love for as many people as possible to know they can use your model 🤗 | |
# ### 4) Fill up your model card | |
# When we add extra information about models to the leaderboard, it will be automatically taken from the model card | |
# ## In case of model failure | |
# If your model is displayed in the `FAILED` category, its execution stopped. | |
# Make sure you have followed the above steps first. | |
# If everything is done, check you can launch the EleutherAIHarness on your model locally, using the above command without modifications (you can add `--limit` to limit the number of examples per task). | |
# """ | |
CITATION_BUTTON_LABEL = "Copy the following snippet to cite these results" | |
CITATION_BUTTON_TEXT = r""" | |
""" | |