Spaces:
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Simon Dürr
commited on
Commit
•
28cb117
1
Parent(s):
f095f6c
add sample output
Browse files- inference_app.py +40 -3
- test_out.pdb +0 -0
inference_app.py
CHANGED
@@ -6,13 +6,15 @@ import gradio as gr
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from gradio_molecule3d import Molecule3D
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def predict (input_sequence, input_ligand):
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start_time = time.time()
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# Do inference here
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# return an output directory
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end_time = time.time()
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run_time = end_time - start_time
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return
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with gr.Blocks() as app:
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@@ -25,13 +27,48 @@ with gr.Blocks() as app:
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# define any options here
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#
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# slider_option = gr.Slider(0,10, label="Slider Option")
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# checkbox_option = gr.Checkbox(label="Checkbox Option")
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# dropdown_option = gr.Dropdown(["Option 1", "Option 2", "Option 3"], label="Radio Option")
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btn = gr.Button("Run Inference")
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-
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run_time = gr.Textbox(label="Runtime")
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btn.click(predict, inputs=[input_sequence, input_ligand], outputs=[out, run_time])
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from gradio_molecule3d import Molecule3D
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def predict (input_sequence, input_ligand):
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start_time = time.time()
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# Do inference here
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# return an output directory
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end_time = time.time()
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run_time = end_time - start_time
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return "test_out.pdb", run_time
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with gr.Blocks() as app:
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# define any options here
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# for automated inference the default options are used
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# slider_option = gr.Slider(0,10, label="Slider Option")
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# checkbox_option = gr.Checkbox(label="Checkbox Option")
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# dropdown_option = gr.Dropdown(["Option 1", "Option 2", "Option 3"], label="Radio Option")
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btn = gr.Button("Run Inference")
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gr.Examples(
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[
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[
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"SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL:SVKSEYAEAAAVGQEAVAVFNTMKAAFQNGDKEAVAQYLARLASLYTRHEELLNRILEKARREGNKEAVTLMNEFTATFQTGKSIFNAMVAAFKNGDDDSFESYLQALEKVTAKGETLADQIAKAL"
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"COc1ccc(cc1)n2c3c(c(n2)C(=O)N)CCN(C3=O)c4ccc(cc4)N5CCCCC5=O",
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],
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],
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[input_sequence, input_ligand],
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)
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reps = [
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{
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"model": 0,
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"chain": "",
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"resname": "",
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"style": "cartoon",
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"color": "whiteCarbon",
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"residue_range": "",
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"around": 0,
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"byres": False,
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"visible": False
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},
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{
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"model": 1,
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"chain": "",
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"resname": "",
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"style": "stick",
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"color": "greenCarbon",
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"residue_range": "",
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"around": 0,
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"byres": False,
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"visible": False
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}
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]
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out = Molecule3D(reps=reps)
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run_time = gr.Textbox(label="Runtime")
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btn.click(predict, inputs=[input_sequence, input_ligand], outputs=[out, run_time])
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test_out.pdb
ADDED
The diff for this file is too large to render.
See raw diff
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