gradio gradio_molecule3d setuptools==59.5.0 openmm==7.7 pdbfixer lightning==2.* biopython==1.79 numpy==1.21 PyYAML==5.4.1 requests scipy==1.7 tqdm==4.62.2 typing-extensions wandb==0.12.21 modelcif==0.7 awscli ml-collections aria2 rdkit==1.21 torch==2.3.0 dm-tree==0.1.6 git+https://github.com/NVIDIA/dllogger.git