Update inference_app.py

inference_app.py

@@ -14,7 +14,8 @@ def set_all_to_zero(input_pdb_file_1, input_pdb_file_2, output_file):
     structure1 = PDBFile.read(input_pdb_file_1).get_structure()
     structure2 = PDBFile.read(input_pdb_file_2).get_structure()
     structure1.coord = np.zeros_like(structure1.coord)
-    structure2.coord = np.zeros_like(structure2.coord)
+    # shift second to avoid interchain "clash"
+    structure2.coord = np.ones_like(structure2.coord) * np.array([0, 0, 3.6])
     out_structure = structure1 + structure2
     file = PDBFile()
     file.set_structure(out_structure)