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MilesCranmer
commited on
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6a4fa2c
1
Parent(s):
97e6589
Fix issue with lambda getting redefined; add test
Browse files- pysr/sr.py +15 -2
- test/test.py +28 -4
pysr/sr.py
CHANGED
@@ -61,6 +61,19 @@ sympy_mappings = {
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'gamma': lambda x : sympy.gamma(x),
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}
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def pysr(X, y, weights=None,
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binary_operators=None,
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unary_operators=None,
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@@ -774,8 +787,8 @@ def get_hof(equation_file=None, n_features=None, variable_names=None,
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if output_jax_format:
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func, params = sympy2jax(eqn, sympy_symbols)
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jax_format.append({'callable': func, 'parameters': params})
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-
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-
lambda_format.append(
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curMSE = output.loc[i, 'MSE']
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curComplexity = output.loc[i, 'Complexity']
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'gamma': lambda x : sympy.gamma(x),
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}
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+
class CallableEquation(object):
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"""Simple wrapper for numpy lambda functions built with sympy"""
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def __init__(self, sympy_symbols, eqn):
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self._sympy = eqn
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self._sympy_symbols = sympy_symbols
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self._lambda = lambdify(sympy_symbols, eqn)
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def __repr__(self):
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return f"PySRFunction(X=>{self._sympy})"
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def __call__(self, X):
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return self._lambda(*X.T)
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def pysr(X, y, weights=None,
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binary_operators=None,
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unary_operators=None,
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if output_jax_format:
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func, params = sympy2jax(eqn, sympy_symbols)
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jax_format.append({'callable': func, 'parameters': params})
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+
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lambda_format.append(CallableEquation(sympy_symbols, eqn))
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curMSE = output.loc[i, 'MSE']
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curComplexity = output.loc[i, 'Complexity']
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test/test.py
CHANGED
@@ -1,8 +1,9 @@
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import unittest
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import numpy as np
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-
from pysr import pysr, get_hof, best, best_tex, best_callable
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from pysr.sr import run_feature_selection, _handle_feature_selection
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import sympy
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import pandas as pd
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class TestPipeline(unittest.TestCase):
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@@ -27,12 +28,36 @@ class TestPipeline(unittest.TestCase):
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y = self.X[:, [0, 1]]**2
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equations = pysr(self.X, y,
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unary_operators=["sq(x) = x^2"], binary_operators=["plus"],
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-
extra_sympy_mappings={'
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-
**self.default_test_kwargs
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print(equations)
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self.assertLessEqual(equations[0].iloc[-1]['MSE'], 1e-4)
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self.assertLessEqual(equations[1].iloc[-1]['MSE'], 1e-4)
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def test_empty_operators_single_input(self):
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X = np.random.randn(100, 1)
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y = X[:, 0] + 3.0
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@@ -40,7 +65,6 @@ class TestPipeline(unittest.TestCase):
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unary_operators=[], binary_operators=["plus"],
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**self.default_test_kwargs)
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-
print(equations)
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self.assertLessEqual(equations.iloc[-1]['MSE'], 1e-4)
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class TestBest(unittest.TestCase):
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import unittest
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import numpy as np
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+
from pysr import pysr, get_hof, best, best_tex, best_callable, best_row
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from pysr.sr import run_feature_selection, _handle_feature_selection
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import sympy
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from sympy import lambdify
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import pandas as pd
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class TestPipeline(unittest.TestCase):
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y = self.X[:, [0, 1]]**2
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equations = pysr(self.X, y,
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unary_operators=["sq(x) = x^2"], binary_operators=["plus"],
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extra_sympy_mappings={'sq': lambda x: x**2},
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**self.default_test_kwargs,
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procs=0)
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print(equations)
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self.assertLessEqual(equations[0].iloc[-1]['MSE'], 1e-4)
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self.assertLessEqual(equations[1].iloc[-1]['MSE'], 1e-4)
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def test_multioutput_weighted_with_callable(self):
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y = self.X[:, [0, 1]]**2
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w = np.random.rand(*y.shape)
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w[w < 0.5] = 0.0
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w[w >= 0.5] = 1.0
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# Double equation when weights are 0:
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y += (1-w) * y
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# Thus, pysr needs to use the weights to find the right equation!
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equations = pysr(self.X, y, weights=w,
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unary_operators=["sq(x) = x^2"], binary_operators=["plus"],
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extra_sympy_mappings={'sq': lambda x: x**2},
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**self.default_test_kwargs,
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procs=0)
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np.testing.assert_almost_equal(
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best_callable()[0](self.X),
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self.X[:, 0]**2)
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np.testing.assert_almost_equal(
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best_callable()[1](self.X),
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self.X[:, 1]**2)
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def test_empty_operators_single_input(self):
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X = np.random.randn(100, 1)
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y = X[:, 0] + 3.0
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unary_operators=[], binary_operators=["plus"],
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**self.default_test_kwargs)
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self.assertLessEqual(equations.iloc[-1]['MSE'], 1e-4)
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class TestBest(unittest.TestCase):
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