rmm
test: visual test of presented content, persistent to tab switching
fc76ddb
import logging
import os
import pandas as pd
import streamlit as st
import folium
from streamlit_folium import st_folium
from transformers import pipeline
from transformers import AutoModelForImageClassification
from maps.obs_map import add_obs_map_header
from classifier.classifier_image import add_classifier_header
from datasets import disable_caching
disable_caching()
import whale_gallery as gallery
import whale_viewer as viewer
from input.input_handling import setup_input, check_inputs_are_set
from input.input_handling import init_input_container_states, add_input_UI_elements, init_input_data_session_states
from input.input_handling import dbg_show_observation_hashes
from maps.alps_map import present_alps_map
from maps.obs_map import present_obs_map
from utils.st_logs import parse_log_buffer, init_logging_session_states
from utils.workflow_ui import refresh_progress_display, init_workflow_viz, init_workflow_session_states
from hf_push_observations import push_all_observations
from classifier.classifier_image import cetacean_just_classify, cetacean_show_results_and_review, cetacean_show_results, init_classifier_session_states
from classifier.classifier_hotdog import hotdog_classify
# setup for the ML model on huggingface (our wrapper)
os.environ["PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION"] = "python"
#classifier_revision = '0f9c15e2db4d64e7f622ade518854b488d8d35e6'
classifier_revision = 'main' # default/latest version
# and the dataset of observations (hf dataset in our space)
dataset_id = "Saving-Willy/temp_dataset"
data_files = "data/train-00000-of-00001.parquet"
USE_BASIC_MAP = False
DEV_SIDEBAR_LIB = True
# one toggle for all the extra debug text
if "MODE_DEV_STATEFUL" not in st.session_state:
st.session_state.MODE_DEV_STATEFUL = False
# get a global var for logger accessor in this module
LOG_LEVEL = logging.DEBUG
g_logger = logging.getLogger(__name__)
g_logger.setLevel(LOG_LEVEL)
st.set_page_config(layout="wide")
# initialise various session state variables
init_logging_session_states() # logging init should be early
init_workflow_session_states()
init_input_data_session_states()
init_input_container_states()
init_workflow_viz()
init_classifier_session_states()
def main() -> None:
"""
Main entry point to set up the streamlit UI and run the application.
The organisation is as follows:
1. observation input (a new observations) is handled in the sidebar
2. the rest of the interface is organised in tabs:
- cetean classifier
- hotdog classifier
- map to present the obersvations
- table of recent log entries
- gallery of whale images
The majority of the tabs are instantiated from modules. Currently the two
classifiers are still in-line here.
"""
g_logger.info("App started.")
g_logger.warning(f"[D] Streamlit version: {st.__version__}. Python version: {os.sys.version}")
#g_logger.debug("debug message")
#g_logger.info("info message")
#g_logger.warning("warning message")
# Streamlit app
tab_inference, tab_hotdogs, tab_map, tab_coords, tab_log, tab_gallery = \
st.tabs(["Cetecean classifier", "Hotdog classifier", "Map", "*:gray[Dev:coordinates]*", "Log", "Beautiful cetaceans"])
# put this early so the progress indicator is at the top (also refreshed at end)
refresh_progress_display()
# create a sidebar, and parse all the input (returned as `observations` object)
with st.sidebar:
# layout handling
add_input_UI_elements()
# input elements (file upload, text input, etc)
setup_input()
with tab_map:
# visual structure: a couple of toggles at the top, then the map inlcuding a
# dropdown for tileset selection.
add_obs_map_header()
tab_map_ui_cols = st.columns(2)
with tab_map_ui_cols[0]:
show_db_points = st.toggle("Show Points from DB", True)
with tab_map_ui_cols[1]:
dbg_show_extra = st.toggle("Show Extra points (test)", False)
if show_db_points:
# show a nicer map, observations marked, tileset selectable.
st_observation = present_obs_map(
dataset_id=dataset_id, data_files=data_files,
dbg_show_extra=dbg_show_extra)
else:
# development map.
st_observation = present_alps_map()
with tab_log:
handler = st.session_state['handler']
if handler is not None:
records = parse_log_buffer(handler.buffer)
st.dataframe(records[::-1], use_container_width=True,)
st.info(f"Length of records: {len(records)}")
else:
st.error("⚠️ No log handler found!")
with tab_coords:
# the goal of this tab is to allow selection of the new obsvation's location by map click/adjust.
st.markdown("Coming later! :construction:")
st.markdown(
"""*The goal is to allow interactive definition for the coordinates of a new
observation, by click/drag points on the map.*""")
st.write("Click on the map to capture a location.")
#m = folium.Map(location=visp_loc, zoom_start=7)
mm = folium.Map(location=[39.949610, -75.150282], zoom_start=16)
folium.Marker( [39.949610, -75.150282], popup="Liberty Bell", tooltip="Liberty Bell"
).add_to(mm)
st_data2 = st_folium(mm, width=725)
st.write("below the map...")
if st_data2['last_clicked'] is not None:
print(st_data2)
st.info(st_data2['last_clicked'])
with tab_gallery:
# here we make a container to allow filtering css properties
# specific to the gallery (otherwise we get side effects)
tg_cont = st.container(key="swgallery")
with tg_cont:
gallery.render_whale_gallery(n_cols=4)
# state handling re data_entry phases
# 0. no data entered yet -> display the file uploader thing
# 1. we have some images, but not all the metadata fields are done -> validate button shown, disabled
# 2. all data entered -> validate button enabled
# 3. validation button pressed, validation done -> enable the inference button.
# - at this point do we also want to disable changes to the metadata selectors?
# anyway, simple first.
if st.session_state.workflow_fsm.is_in_state('doing_data_entry'):
# can we advance state? - only when all inputs are set for all uploaded files
all_inputs_set = check_inputs_are_set(debug=True, empty_ok=False)
if all_inputs_set:
st.session_state.workflow_fsm.complete_current_state()
# -> data_entry_complete
else:
# button, disabled; no state change yet.
st.sidebar.button(":gray[*Validate*]", disabled=True, help="Please fill in all fields.")
if st.session_state.workflow_fsm.is_in_state('data_entry_complete'):
# can we advance state? - only when the validate button is pressed
if st.sidebar.button(":white_check_mark:[**Validate**]"):
# create a dictionary with the submitted observation
tab_log.info(f"{st.session_state.observations}")
df = pd.DataFrame([obs.to_dict() for obs in st.session_state.observations.values()])
#df = pd.DataFrame(st.session_state.observations, index=[0])
with tab_coords:
st.table(df)
# there doesn't seem to be any actual validation here?? TODO: find validator function (each element is validated by the input box, but is there something at the whole image level?)
# hmm, maybe it should actually just be "I'm done with data entry"
st.session_state.workflow_fsm.complete_current_state()
# -> data_entry_validated
# state handling re inference phases (tab_inference)
# 3. validation button pressed, validation done -> enable the inference button.
# 4. inference button pressed -> ML started. | let's cut this one out, since it would only
# make sense if we did it as an async action
# 5. ML done -> show results, and manual validation options
# 6. manual validation done -> enable the upload buttons
#
with tab_inference:
# inside the inference tab, on button press we call the model (on huggingface hub)
# which will be run locally.
# - the model predicts the top 3 most likely species from the input image
# - these species are shown
# - the user can override the species prediction using the dropdown
# - an observation is uploaded if the user chooses.
if st.session_state.MODE_DEV_STATEFUL:
dbg_show_observation_hashes()
add_classifier_header()
# if we are before data_entry_validated, show the button, disabled.
if not st.session_state.workflow_fsm.is_in_state_or_beyond('data_entry_validated'):
tab_inference.button(":gray[*Identify with cetacean classifier*]", disabled=True,
help="Please validate inputs before proceeding",
key="button_infer_ceteans")
if st.session_state.workflow_fsm.is_in_state('data_entry_validated'):
# show the button, enabled. If pressed, we start the ML model (And advance state)
if tab_inference.button("Identify with cetacean classifier",
key="button_infer_ceteans"):
cetacean_classifier = AutoModelForImageClassification.from_pretrained(
"Saving-Willy/cetacean-classifier",
revision=classifier_revision,
trust_remote_code=True)
cetacean_just_classify(cetacean_classifier)
st.session_state.workflow_fsm.complete_current_state()
# trigger a refresh too (refreshhing the prog indicator means the script reruns and
# we can enter the next state - visualising the results / review)
# ok it doesn't if done programmatically. maybe interacting with teh button? check docs.
refresh_progress_display()
#TODO: validate this doesn't harm performance adversely.
st.rerun()
elif st.session_state.workflow_fsm.is_in_state('ml_classification_completed'):
# show the results, and allow manual validation
st.markdown("""### Inference results and manual validation/adjustment """)
if st.session_state.MODE_DEV_STATEFUL:
s = ""
for k, v in st.session_state.whale_prediction1.items():
s += f"* Image {k}: {v}\n"
st.markdown(s)
# add a button to advance the state
if st.button("Confirm species predictions", help="Confirm that all species are selected correctly"):
st.session_state.workflow_fsm.complete_current_state()
# -> manual_inspection_completed
st.rerun()
cetacean_show_results_and_review()
elif st.session_state.workflow_fsm.is_in_state('manual_inspection_completed'):
# show the ML results, and allow the user to upload the observation
st.markdown("""### Inference Results (after manual validation) """)
if st.button("Upload all observations to THE INTERNET!"):
# let this go through to the push_all func, since it just reports to log for now.
push_all_observations(enable_push=False)
st.session_state.workflow_fsm.complete_current_state()
# -> data_uploaded
st.rerun()
cetacean_show_results()
elif st.session_state.workflow_fsm.is_in_state('data_uploaded'):
# the data has been sent. Lets show the observations again
# but no buttons to upload (or greyed out ok)
st.markdown("""### Observation(s) uploaded - thank you!""")
cetacean_show_results()
st.divider()
#df = pd.DataFrame(st.session_state.observations, index=[0])
df = pd.DataFrame([obs.to_dict() for obs in st.session_state.observations.values()])
st.table(df)
# didn't decide what the next state is here - I think we are in the terminal state.
#st.session_state.workflow_fsm.complete_current_state()
# inside the hotdog tab, on button press we call a 2nd model (totally unrelated at present, just for demo
# purposes, an hotdog image classifier) which will be run locally.
# - this model predicts if the image is a hotdog or not, and returns probabilities
# - the input image is the same as for the ceteacean classifier - defined in the sidebar
tab_hotdogs.title("Hot Dog? Or Not?")
tab_hotdogs.write("""
*Run alternative classifer on input images. Here we are using
a binary classifier - hotdog or not - from
huggingface.co/julien-c/hotdog-not-hotdog.*""")
if tab_hotdogs.button("Get Hotdog Prediction"):
pipeline_hot_dog = pipeline(task="image-classification", model="julien-c/hotdog-not-hotdog")
if st.session_state.image is None:
st.info("Please upload an image first.")
#st.info(str(observations.to_dict()))
else:
hotdog_classify(pipeline_hot_dog, tab_hotdogs)
# after all other processing, we can show the stage/state
refresh_progress_display()
if __name__ == "__main__":
main()