
Refactor Gradio interface layout for submission filtering; enhance search functionality with improved structure and labeling.
d041d2b
import sys | |
import subprocess | |
import gradio as gr | |
import json | |
from datetime import datetime, timezone | |
from huggingface_hub import upload_file, snapshot_download | |
import shutil | |
import os | |
import glob | |
from pathlib import Path | |
from huggingface_hub import whoami | |
import platform | |
print(subprocess.check_output( | |
[sys.executable, "-m", "pip", "list"]).decode("utf-8")) | |
print({ | |
"python": platform.python_version(), | |
"os": platform.system(), | |
"platform": platform.platform(), | |
"arch": platform.machine() | |
}) | |
print("Account token used to connect to HuggingFace: ", whoami()['name']) | |
SUBMISSION_REPO = "SimulaMet/medvqa-submissions" | |
hub_path = None | |
submissions = None | |
last_submission_update_time = datetime.now(timezone.utc) | |
def refresh_submissions(): | |
global hub_path, submissions, last_submission_update_time | |
if hub_path and Path(hub_path).exists(): | |
shutil.rmtree(hub_path, ignore_errors=True) | |
print("Deleted existing submissions") | |
hub_path = snapshot_download( | |
repo_type="dataset", repo_id=SUBMISSION_REPO, allow_patterns=['**/*.json']) | |
print("Downloaded submissions to:", hub_path) | |
if not os.path.exists(hub_path): | |
os.makedirs(hub_path) | |
all_jsons = glob.glob(hub_path + "/**/*.json", recursive=True) | |
json_files = [f.split("/")[-1] for f in all_jsons] | |
print("json_files count:", len(json_files)) | |
submissions = [] | |
for file in json_files: | |
username, sub_timestamp, task = file.replace( | |
".json", "").split("-_-_-") | |
submissions.append({"user": username, "task": task, | |
"submitted_time": sub_timestamp}) | |
last_submission_update_time = datetime.now(timezone.utc) | |
return hub_path | |
hub_path = refresh_submissions() | |
hub_dir = hub_path.split("snapshot")[0] + "snapshot" | |
def time_ago(submitted_time): | |
return str(datetime.fromtimestamp(int(submitted_time), tz=timezone.utc)) + " UTC" | |
def filter_submissions(task_type, search_query): | |
if search_query == "": | |
filtered = [s for s in submissions if task_type == | |
"all" or s["task"] == task_type] | |
else: | |
filtered = [s for s in submissions if ( | |
task_type == "all" or s["task"] == task_type) and search_query.lower() in s["user"].lower()] | |
return [{"user": s["user"], "task": s["task"], "submitted_time": time_ago(s["submitted_time"])} for s in filtered] | |
def display_submissions(task_type="all", search_query=""): | |
if submissions is None or ((datetime.now(timezone.utc) - last_submission_update_time).total_seconds() > 3600): | |
refresh_submissions() | |
filtered_submissions = filter_submissions(task_type, search_query) | |
return [[s["user"], s["task"], s["submitted_time"]] for s in filtered_submissions] | |
def add_submission(file): | |
global submissions | |
try: | |
with open(file, 'r', encoding='utf-8') as f: | |
data = json.load(f) | |
filename = os.path.basename(file) | |
username, sub_timestamp, task = filename.replace( | |
".json", "").split("-_-_-") | |
submission_time = datetime.fromtimestamp( | |
int(sub_timestamp), tz=timezone.utc) | |
assert task in ["task1", "task2"], "Invalid task type" | |
assert len(username) > 0, "Invalid username" | |
assert submission_time < datetime.now( | |
timezone.utc), "Invalid submission time" | |
upload_file( | |
repo_type="dataset", | |
path_or_fileobj=file, | |
path_in_repo=task + "/" + filename, | |
repo_id=SUBMISSION_REPO | |
) | |
refresh_submissions() | |
return "πͺππ Submissions registered successfully to the system!" | |
except Exception as e: | |
return f"β Error adding submission: {e}" | |
def refresh_page(): | |
return "Pong! Submission server is alive! π" | |
# Define Gradio Interface | |
with gr.Blocks(title="πImageCLEFmed-MEDVQA-GI 2025 Submissions π") as demo: | |
gr.Markdown(""" | |
# π Welcome to the official submission portal for the [MEDVQA-GI 2025](https://www.imageclef.org/2025/medical/vqa) challenge! π₯𧬠| |
### π [**Challenge Homepage** in GitHub](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025) | π [**Register** for ImageCLEF 2025](https://www.imageclef.org/2025#registration) | π [**Competition Schedule**](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025#:~:text=Schedule) | π¦ [**Submission Instructions**](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025#-submission-system)π₯π₯ | |
### π₯ [**Available Datasets**](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025#-data) | π‘ [Tasks & Example Training **Notebooks**](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025#-task-descriptions)π₯π₯ | |
""") | |
with gr.Tab("View Submissions"): | |
gr.Markdown("### Filter and Search Submissions") | |
with gr.Row(): | |
with gr.Column(scale=1): | |
task_type_dropdown = gr.Dropdown( | |
choices=["all", "task1", "task2"], | |
value="all", | |
label="Task Type" | |
) | |
search_box = gr.Textbox( | |
label="Search by Username", | |
placeholder="Enter username..." | |
) | |
with gr.Column(scale=2): | |
output_table = gr.Dataframe( | |
headers=["User", "Task", "Submitted Time"], | |
interactive=False, | |
wrap=True, | |
label="Submissions" | |
) | |
task_type_dropdown.change( | |
fn=display_submissions, | |
inputs=[task_type_dropdown, search_box], | |
outputs=output_table | |
) | |
search_box.change( | |
fn=display_submissions, | |
inputs=[task_type_dropdown, search_box], | |
outputs=output_table | |
) | |
gr.Markdown( | |
f''' | |
π Last refreshed: {last_submission_update_time.strftime('%Y-%m-%d %H:%M:%S')} UTC | π Total Submissions: {len(submissions)} | |
π¬ For any questions or issues, [contact the organizers](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025#-organizers) or check the documentation in the [GitHub repo](https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025). Good luck and thank you for contributing to medical AI research! πͺπ€π | |
''') | |
with gr.Tab("Upload Submission", visible=False): | |
file_input = gr.File(label="Upload JSON", file_types=[".json"]) | |
upload_output = gr.Textbox(label="Upload Result") | |
file_input.upload(fn=add_submission, | |
inputs=file_input, outputs=upload_output) | |
with gr.Tab("Refresh API", visible=False): | |
refresh_button = gr.Button("Refresh") | |
status_output = gr.Textbox(label="Status") | |
refresh_button.click(fn=refresh_page, inputs=[], outputs=status_output) | |
demo.load(lambda: display_submissions("all", ""), | |
inputs=[], outputs=output_table) | |
demo.launch() | |