init task 1

medvqa/cli.py

@@ -10,15 +10,7 @@ If it still cannot solve the problem, don't hesitate to add an issue at https://
 ⚠️⚠️⚠️'''
 
 
-def main():
-    parser = argparse.ArgumentParser(
-        description='MedVQA CLI', allow_abbrev=False)
-    parser.add_argument('--competition', type=str, required=True,
-                        help='Name of the competition (e.g., gi-2025)')
-    parser.add_argument('--task', type=str, required=True,
-                        help='Task number (1 or 2)')
-    args, unknown = parser.parse_known_args()
-
+def validate(args, unk_args, submit=False):
     # Dynamically find the base directory of the MedVQA library
     base_dir = os.path.dirname(os.path.abspath(__file__))
 
@@ -32,9 +24,32 @@ def main():
     if not os.path.isfile(task_file):
         raise FileNotFoundError(
             f"Task '{args.task}' does not exist! Need to update library?"+report)
-    subprocess.run(
-        ['python', task_file] + unknown)
+    if submit:
+        subprocess.run(['python', task_file] + unk_args,
+                       env={**os.environ, "_MEDVQA_SUBMIT_FLAG_": "TRUE"})
+    else:
+        subprocess.run(
+            ['python', task_file] + unk_args)
+
+
+def main():
+    parser = argparse.ArgumentParser(description='MedVQA CLI')
+    subparsers = parser.add_subparsers(
+        dest='command', required=True, help="Either 'validate' or 'validate_and_submit'")
+
+    for cmd in ['validate', 'validate_and_submit']:
+        subparser = subparsers.add_parser(cmd)
+        subparser.add_argument(
+            '--competition', required=True, help='Name of the competition (e.g., gi-2025)')
+        subparser.add_argument('--task', required=True,
+                               help='Task number (1 or 2)')
+
+    args, _unk_args = parser.parse_known_args()
+    if args.command == 'validate':
+        validate(args, _unk_args)
+    else:
+        validate(args, _unk_args, submit=True)
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     main()

medvqa/competitions/gi-2025/task_1.py

@@ -1,19 +1,51 @@
+from huggingface_hub import snapshot_download, login, whoami
 import sys
 import argparse
+import os
+import subprocess as sp
 
 
-def main(repo, verbose=False):
-    print("🌟 ImageCLEFmed-MEDVQA-GI-2025 🌟",
-          "https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025")
-    print("🔍 Subtask 1: Algorithm Development for Question Interpretation and Response")
-    print(f"Analyzing submission repository: {repo}")
-    if verbose:
-        print("Verbose mode is enabled")
+MEDVQA_SUBMIT = True if os.environ.get(
+    '_MEDVQA_SUBMIT_FLAG_', 'FALSE') == 'TRUE' else False
+parser = argparse.ArgumentParser(description='Run GI-1015 Task 1 (VQA)')
+parser.add_argument('--repo_id', type=str, required=True,
+                    help='Path to the HF submission repository')
+args, _ = parser.parse_known_args()
 
+os.environ["HF_HUB_ENABLE_HF_TRANSFER"] = "1"
+submission_file = "submission_task1.py"
+min_library = ["datasets", "transformers"]
 
-if __name__ == '__main__':
-    parser = argparse.ArgumentParser(description='Run GI-1015 Task 1 (VQA)')
-    parser.add_argument('--submission_repo', type=str, required=True,
-                        help='Path to the HF submission repository')
-    args, _ = parser.parse_known_args()
-    main(args.submission_repo)
+print("🌟 ImageCLEFmed-MEDVQA-GI-2025 🌟",
+      "https://github.com/simula/ImageCLEFmed-MEDVQA-GI-2025")
+print("🔍 Subtask 1: Algorithm Development for Question Interpretation and Response")
+print(f"👀 Analyzing submission repository: {args.repo_id} 👀")
+
+try:
+    print(f"Logged in as: {whoami()['name']}")
+except Exception:
+    print("⚠️⚠️ Not logged in to HuggingFace! Please get your login token from https://huggingface.co/settings/tokens 🌐")
+    login()
+
+snap_dir = snapshot_download(
+    repo_id=args.repo_id, allow_patterns=[submission_file, "requirements.txt"])
+
+if not os.path.isfile(os.path.join(snap_dir, submission_file)):
+    raise FileNotFoundError(
+        f"Submission file '{submission_file}' not found in the repository!")
+
+print("📦 Making sure of the minimum requirements to run the script 📦")
+sp.run(["python", "-m", "pip", "install"] + min_library, check=True)
+
+if os.path.isfile(os.path.join(snap_dir, "requirements.txt")):
+    print(
+        f"📦 Installing requirements from the submission repo: {args.repo_id}/requirements.txt")
+    sp.run(["python", "-m", "pip", "install", "-r",
+            f"{snap_dir}/requirements.txt"], cwd=snap_dir, check=True)
+
+sp.run(["python", f"{snap_dir}/{submission_file}"],
+       cwd=snap_dir, check=True)
+
+breakpoint()
+if MEDVQA_SUBMIT:
+    print("🚀 Preparing for submission 🚀")

pyproject.toml

@@ -5,7 +5,8 @@ description = "Competition Submission CLI for ImageCLEFmed-MedVQA-GI-2025 (https
 readme = "README.md"
 requires-python = ">=3.6"
 dependencies = [
-    # Add your dependencies here
+    "huggingface_hub",
+    "huggingface_hub[hf_transfer]",
 ]
 authors = [
   { name="Sushant Gautam", email="[email protected]" },