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Update app.py
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app.py
CHANGED
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import os
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import streamlit as st
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import torch
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from torch.utils.data import DataLoader, TensorDataset
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from preprocessing import preprocess_image
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from train import fine_tune_model
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labels = [] # Assuming you have labels, adjust as needed
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# Append corresponding label (this is just an example; adjust as needed)
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label = ... # Replace with logic to get the label for the image
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labels.append(label)
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# Stack images into a single tensor and create a DataLoader
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images_tensor = torch.stack(images) # Stack into a single tensor
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labels_tensor = torch.tensor(labels) # Convert labels to tensor
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dataset = TensorDataset(images_tensor, labels_tensor)
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return DataLoader(dataset, batch_size=16, shuffle=True) # Adjust batch_size as needed
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# Streamlit UI
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st.title("MRI Image Fine-Tuning with ViT")
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# Upload images or provide a directory path
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image_directory = st.text_input("Enter the directory of images:")
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if st.button("Load Images"):
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# Get all image paths from the directory
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if image_directory and os.path.isdir(image_directory):
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image_paths = [os.path.join(image_directory, f) for f in os.listdir(image_directory) if f.endswith(('.nii', '.jpg', '.jpeg'))]
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st.success(f"Loaded {len(image_paths)} images.")
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# Preprocess images and create DataLoader
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train_loader = load_images(image_paths)
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# Button to start training
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if st.button("Start Training"):
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final_loss = fine_tune_model(train_loader) # Trigger fine-tuning
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st.write(f"Training complete with final loss: {final_loss}")
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else:
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st.error("Please enter a valid directory.")
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import zipfile
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import os
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def extract_zip(zip_file, extract_to):
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with zipfile.ZipFile(zip_file, 'r') as zip_ref:
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zip_ref.extractall(extract_to)
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# Example usage
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zip_file_path = 'path_to_your_zip_file.zip'
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extract_to = 'path_to_extracted_images/'
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extract_zip(zip_file_path, extract_to)
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