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Runtime error
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eefdf2d
1
Parent(s):
9fb1a0f
test
Browse files
app.py
CHANGED
@@ -3,10 +3,12 @@ from transformers import AutoTokenizer, AutoModelForMaskedLM
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import torch
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from torch.distributions.categorical import Categorical
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# Load the model and tokenizer
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tokenizer = AutoTokenizer.from_pretrained("TianlaiChen/PepMLM-650M")
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model = AutoModelForMaskedLM.from_pretrained("TianlaiChen/PepMLM-650M")
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def generate_peptide(protein_seq, peptide_length, top_k):
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print('Within')
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peptide_length = int(peptide_length)
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@@ -29,6 +31,11 @@ def generate_peptide(protein_seq, peptide_length, top_k):
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generated_peptide = tokenizer.decode(predicted_token_ids, skip_special_tokens=True)
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return f"Generated Sequence: {generated_peptide.replace(' ', '')}"
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# Define the Gradio interface
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interface = gr.Interface(
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import torch
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from torch.distributions.categorical import Categorical
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'''
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# Load the model and tokenizer
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tokenizer = AutoTokenizer.from_pretrained("TianlaiChen/PepMLM-650M")
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model = AutoModelForMaskedLM.from_pretrained("TianlaiChen/PepMLM-650M")
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def generate_peptide(protein_seq, peptide_length, top_k):
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print('Within')
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peptide_length = int(peptide_length)
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generated_peptide = tokenizer.decode(predicted_token_ids, skip_special_tokens=True)
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return f"Generated Sequence: {generated_peptide.replace(' ', '')}"
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'''
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def hello():
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print('hello')
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return "hello"
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# Define the Gradio interface
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interface = gr.Interface(
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