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Create app.py
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app.py
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import gradio as gr
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import json
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from itertools import product
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import subprocess # assuming you need this for calling run_on_scc.sh
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# Helper function to run the analysis
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def run_analysis(datasets, machines):
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selected_datasets = datasets # it's already a list
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selected_machines = machines # it's already a list
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if not selected_datasets:
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return "Please select at least one dataset."
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if not selected_machines:
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return "Please select at least one machine."
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configurations = []
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for dataset, machine in product(selected_datasets, selected_machines):
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config = {
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"Dataset": dataset, "Binary": "True", "Image": "False", "TM_use": False, "value": "None", "Interpolation_value": "None", "Noise": False, "noise_type": False, "augmentation": False, "shear_factor": "None", "shear_prop": 0, "crop_scale_factor": "None", "crop_scale_prop": 0, "flip_code": "None", "flip_prop": 0, "rotation_angle": "None", "rotate_prop": 0, "color_number": "None", "color_prop": 0, "blur_param": "None", "blur_prop": 0, "features": "False", "glcm_distance": "None", "glcm_angle": "None", "glcm_prop": 0, "lbp_radius": "None", "lbp_prop": 0, "haralick_prop": 0, "Machine": machine, "lr": "None", "epochs": "None"
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}
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configurations.append(config)
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filepath = "results/models-parameters_list.txt"
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output_filepath = "results/evaluation_scores.txt"
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with open(filepath, 'w') as f:
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for config in configurations:
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f.write(json.dumps(config))
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f.write("\n\n")
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# Call the SCC script and return computing status
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result = subprocess.run(["run_on_scc.sh"], capture_output=True, text=True)
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return "Computing..."
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# Function to update the summary textbox
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def update_summary(datasets, machines):
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# datasets and machines are lists, not dictionaries
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summary_text = f"Selected Datasets:\n{', '.join(datasets) if datasets else 'None'}\n\n"
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summary_text += f"Selected Machines:\n{', '.join(machines) if machines else 'None'}"
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return summary_text
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# Gradio components
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with gr.Blocks() as app:
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gr.Markdown("# Cancer Analysis Tool")
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# Tab 1: Dataset Selection
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with gr.Tab("Dataset"):
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datasets = gr.CheckboxGroup(
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["Binary Colon", "Binary Lung", "Binary Prostate"],
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label="Select Datasets:"
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)
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# Tab 2: Machine Selection
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with gr.Tab("Machines"):
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machines = gr.CheckboxGroup(
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["Binary SVM", "Binary KNN", "Binary Deepnet"],
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label="Select Machines:"
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)
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# Tab 3: Summary and Analysis
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with gr.Tab("Analysis"):
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summary = gr.Textbox(label="Summary of Selections", interactive=False)
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run_button = gr.Button("Run Analysis")
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result = gr.Textbox(label="Result", interactive=False)
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# Trigger analysis
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run_button.click(
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run_analysis,
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inputs=[datasets, machines],
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outputs=result
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)
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# Update summary when selections change
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datasets.change(update_summary, [datasets, machines], summary)
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machines.change(update_summary, [datasets, machines], summary)
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# Launch the Gradio interface
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app.launch(share=True)
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