Update pipeline.py

pipeline.py

@@ -202,8 +202,15 @@ def pipeline_with_gemini(accessions):
       sample_folder_id = get_or_create_drive_folder(str(id), parent_id=data_folder_id)
     
       # Define document names
-      chunk_filename = f"{saveTitle}_merged_document.docx"
-      all_filename = f"{saveTitle}_all_merged_document.docx"
+      if len(saveTitle) > 50:  
+          saveName = saveTitle[:50]
+          saveName = saveName.replace(" ", "_")
+          chunk_filename = f"{saveName}_merged_document.docx"
+          all_filename = f"{saveName}_all_merged_document.docx"
+      else:
+          saveName = saveTitle.replace(" ", "_")
+          chunk_filename = f"{saveName}_merged_document.docx"
+          all_filename = f"{saveName}_all_merged_document.docx"
       print(chunk_filename, all_filename)  
       # Define local temp paths for reading/writing
       import tempfile
@@ -215,8 +222,11 @@ def pipeline_with_gemini(accessions):
       print(file_chunk_path)
       # 🔥 Remove the local file first if it exists
       if os.path.exists(file_chunk_path):
+        print("here 1")  
         os.remove(file_chunk_path)
+        print("here 2")  
       if os.path.exists(file_all_path):
+        print("here 3")
         os.remove(file_all_path)    
       print("chunk exist: ", chunk_exists)
       # Try to download if already exists on Drive