VyLala commited on
Commit
688427b
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verified ·
1 Parent(s): 1685f9f

Update pipeline.py

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Files changed (1) hide show
  1. pipeline.py +5 -5
pipeline.py CHANGED
@@ -208,17 +208,17 @@ def pipeline_with_gemini(accessions):
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  # Define local temp paths for reading/writing
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  import tempfile
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  tmp_dir = tempfile.mkdtemp()
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- #file_chunk_path = os.path.join(tmp_dir, chunk_filename)
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- #file_all_path = os.path.join(tmp_dir, all_filename)
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- file_chunk_path = os.path.join(tempfile.gettempdir(), chunk_filename)
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- file_all_path = os.path.join(tempfile.gettempdir(), all_filename)
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  # 🔥 Remove the local file first if it exists
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  if os.path.exists(file_chunk_path):
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  os.remove(file_chunk_path)
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  if os.path.exists(file_all_path):
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  os.remove(file_all_path)
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-
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  # Try to download if already exists on Drive
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  chunk_exists = download_file_from_drive(chunk_filename, sample_folder_id, file_chunk_path)
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  all_exists = download_file_from_drive(all_filename, sample_folder_id, file_all_path)
 
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  # Define local temp paths for reading/writing
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  import tempfile
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  tmp_dir = tempfile.mkdtemp()
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+ file_chunk_path = os.path.join(tmp_dir, chunk_filename)
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+ file_all_path = os.path.join(tmp_dir, all_filename)
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+ # file_chunk_path = os.path.join(tempfile.gettempdir(), chunk_filename)
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+ # file_all_path = os.path.join(tempfile.gettempdir(), all_filename)
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  # 🔥 Remove the local file first if it exists
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  if os.path.exists(file_chunk_path):
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  os.remove(file_chunk_path)
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  if os.path.exists(file_all_path):
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  os.remove(file_all_path)
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+ print("chunk exist: ", chunk_exists)
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  # Try to download if already exists on Drive
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  chunk_exists = download_file_from_drive(chunk_filename, sample_folder_id, file_chunk_path)
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  all_exists = download_file_from_drive(all_filename, sample_folder_id, file_all_path)