Update pipeline.py

pipeline.py

@@ -551,12 +551,16 @@ def pipeline_with_gemini(accessions,niche_cases=None):
         download_file_from_drive(lookup_filename, sample_folder_id, structured_lookup_path)  
         # Read and parse these into `chunk` and `all_output`
       else:
+        "one of id not exist"  
         if os.path.exists(faiss_index_path):
+            print("faiss index exist and start to remove: ", faiss_index_path)
             os.remove(faiss_index_path)
         if os.path.exists(document_chunks_path):
             os.remove(document_chunks_path)
         if os.path.exists(structured_lookup_path):
             os.remove(structured_lookup_path)    
+        print("start to download the faiss, chunk, lookup")
+            
         download_file_from_drive(faiss_filename, sample_folder_id, faiss_index_path)
         download_file_from_drive(chunks_filename, sample_folder_id, document_chunks_path)
         download_file_from_drive(lookup_filename, sample_folder_id, structured_lookup_path)