VyLala commited on
Commit
95f6447
·
verified ·
1 Parent(s): 984070f

Update mtdna_classifier.py

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  1. mtdna_classifier.py +1 -4
mtdna_classifier.py CHANGED
@@ -256,7 +256,6 @@ def classify_sample_location(accession):
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  keyword, context, location, qa_result, haplo_result = "", "", "", "", ""
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  # Step 1: get pubmed id and isolate
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  pubmedID, isolate = get_info_from_accession(accession)
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- print(pubmedID, isolate)
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  if not pubmedID:
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  return {"error": f"Could not retrieve PubMed ID for accession {accession}"}
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  if not isolate:
@@ -320,6 +319,4 @@ def classify_sample_location(accession):
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  # 4.2.1: Infer from haplogroup
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  haplo_result = classify_mtDNA_sample_from_haplo(context)
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  outputs[keyword][key]["haplogroup"] = haplo_result
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- return outputs
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- accession = "KU131308"
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- classify_sample_location(accession)
 
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  keyword, context, location, qa_result, haplo_result = "", "", "", "", ""
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  # Step 1: get pubmed id and isolate
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  pubmedID, isolate = get_info_from_accession(accession)
 
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  if not pubmedID:
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  return {"error": f"Could not retrieve PubMed ID for accession {accession}"}
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  if not isolate:
 
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  # 4.2.1: Infer from haplogroup
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  haplo_result = classify_mtDNA_sample_from_haplo(context)
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  outputs[keyword][key]["haplogroup"] = haplo_result
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+ return outputs