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Update mtdna_classifier.py
Browse files- mtdna_classifier.py +1 -4
mtdna_classifier.py
CHANGED
@@ -256,7 +256,6 @@ def classify_sample_location(accession):
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keyword, context, location, qa_result, haplo_result = "", "", "", "", ""
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# Step 1: get pubmed id and isolate
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pubmedID, isolate = get_info_from_accession(accession)
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print(pubmedID, isolate)
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if not pubmedID:
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return {"error": f"Could not retrieve PubMed ID for accession {accession}"}
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if not isolate:
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@@ -320,6 +319,4 @@ def classify_sample_location(accession):
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# 4.2.1: Infer from haplogroup
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haplo_result = classify_mtDNA_sample_from_haplo(context)
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outputs[keyword][key]["haplogroup"] = haplo_result
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return outputs
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accession = "KU131308"
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classify_sample_location(accession)
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keyword, context, location, qa_result, haplo_result = "", "", "", "", ""
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# Step 1: get pubmed id and isolate
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pubmedID, isolate = get_info_from_accession(accession)
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if not pubmedID:
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return {"error": f"Could not retrieve PubMed ID for accession {accession}"}
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if not isolate:
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# 4.2.1: Infer from haplogroup
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haplo_result = classify_mtDNA_sample_from_haplo(context)
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outputs[keyword][key]["haplogroup"] = haplo_result
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return outputs
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