VyLala commited on
Commit
a4f2474
·
verified ·
1 Parent(s): ce64f58

Update app.py

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Files changed (1) hide show
  1. app.py +5 -0
app.py CHANGED
@@ -21,6 +21,11 @@ print("EDirect esummary found at:", shutil.which("esummary"))'''
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  # Force PATH to include edirect (again, just to be safe)
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  os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
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  print("Current PATH:", os.environ["PATH"])
 
 
 
 
 
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  @lru_cache(maxsize=128)
 
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  # Force PATH to include edirect (again, just to be safe)
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  os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
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  print("Current PATH:", os.environ["PATH"])
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+ subprocess.run("which esummary", shell=True)
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+ test_cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id KU131308 -format medline'
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+ result = subprocess.run(test_cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
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+ print("EDirect output:\n", result.stdout)
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+ print("EDirect error:\n", result.stderr)
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  @lru_cache(maxsize=128)