VyLala commited on
Commit
b9c6d77
·
verified ·
1 Parent(s): 3b4afe3

Update pipeline.py

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Files changed (1) hide show
  1. pipeline.py +2 -11
pipeline.py CHANGED
@@ -221,21 +221,12 @@ def pipeline_with_gemini(accessions):
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  # file_all_path = os.path.join(tempfile.gettempdir(), all_filename)
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  print(file_chunk_path)
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  # 🔥 Remove the local file first if it exists
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- try:
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- os.remove(file_chunk_path)
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- print("✅ Removed chunk file")
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- except FileNotFoundError:
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- print("ℹ️ Chunk file not found — nothing to remove")
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- except Exception as e:
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- print(f"❌ Error removing chunk file: {e}")
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  if os.path.exists(file_chunk_path):
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- print("here 1")
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  os.remove(file_chunk_path)
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- print("here 2")
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  if os.path.exists(file_all_path):
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- print("here 3")
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  os.remove(file_all_path)
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- print("chunk exist: ", chunk_exists)
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  # Try to download if already exists on Drive
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  chunk_exists = download_file_from_drive(chunk_filename, sample_folder_id, file_chunk_path)
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  all_exists = download_file_from_drive(all_filename, sample_folder_id, file_all_path)
 
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  # file_all_path = os.path.join(tempfile.gettempdir(), all_filename)
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  print(file_chunk_path)
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  # 🔥 Remove the local file first if it exists
 
 
 
 
 
 
 
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  if os.path.exists(file_chunk_path):
 
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  os.remove(file_chunk_path)
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+
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  if os.path.exists(file_all_path):
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+
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  os.remove(file_all_path)
 
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  # Try to download if already exists on Drive
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  chunk_exists = download_file_from_drive(chunk_filename, sample_folder_id, file_chunk_path)
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  all_exists = download_file_from_drive(all_filename, sample_folder_id, file_all_path)