Update app.py

app.py

@@ -8,34 +8,6 @@ from functools import lru_cache
 from mtdna_classifier import classify_sample_location
 import subprocess
 
-import shutil
-
-# Force reinstall every time (only if missing)
-if not os.path.exists(f"{os.environ['HOME']}/edirect/esummary"):
-    subprocess.run("yes | sh -c \"$(wget -q https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh -O -)\"", shell=True)
-    os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
-    print("✅ EDirect installed.")
-else:
-    print("✅ EDirect already installed.")
-
-
-# Force PATH to include edirect (again, just to be safe)
-os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
-print("Current PATH:", os.environ["PATH"])
-subprocess.run("which esummary", shell=True)
-accession = "KU131308"
-print(accession)
-test_cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id KU131308 -format medline | egrep "PUBMED|isolate"'
-result = subprocess.run(test_cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
-print("EDirect output:\n", result.stdout)
-print("EDirect error:\n", result.stderr)
-
-cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id {accession} -format medline | egrep "PUBMED|isolate"'
-result = subprocess.run(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
-output = result.stdout
-print(output)
-print("done")
-
 @lru_cache(maxsize=128)
 def classify_sample_location_cached(accession):
     return classify_sample_location(accession)