diffusion_brain / models /unet_v2_conditioned.py
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import math
from abc import abstractmethod
import numpy as np
import torch
import torch as th
import torch.nn as nn
import torch.nn.functional as F
from einops import repeat
from models.attention import SpatialTransformer
def timestep_embedding(timesteps, dim, max_period=10000, repeat_only=False):
"""
Create sinusoidal timestep embeddings.
:param timesteps: a 1-D Tensor of N indices, one per batch element.
These may be fractional.
:param dim: the dimension of the output.
:param max_period: controls the minimum frequency of the embeddings.
:return: an [N x dim] Tensor of positional embeddings.
"""
if not repeat_only:
half = dim // 2
freqs = torch.exp(
-math.log(max_period) * torch.arange(start=0, end=half, dtype=torch.float32) / half
).to(device=timesteps.device)
args = timesteps[:, None].float() * freqs[None]
embedding = torch.cat([torch.cos(args), torch.sin(args)], dim=-1)
if dim % 2:
embedding = torch.cat([embedding, torch.zeros_like(embedding[:, :1])], dim=-1)
else:
embedding = repeat(timesteps, 'b -> b d', d=dim)
return embedding
def zero_module(module):
"""
Zero out the parameters of a module and return it.
"""
for p in module.parameters():
p.detach().zero_()
return module
class TimestepBlock(nn.Module):
@abstractmethod
def forward(self, x, emb):
"""
Apply the module to `x` given `emb` timestep embeddings.
"""
class TimestepEmbedSequential(nn.Sequential, TimestepBlock):
"""
A sequential module that passes timestep embeddings to the children that
support it as an extra input.
"""
def forward(self, x, emb, context=None):
for layer in self:
if isinstance(layer, TimestepBlock):
x = layer(x, emb)
elif isinstance(layer, SpatialTransformer):
x = layer(x, context)
else:
x = layer(x)
return x
def Normalize(in_channels):
return nn.GroupNorm(
num_groups=32,
num_channels=in_channels,
eps=1e-6,
affine=True
)
def count_flops_attn(model, _x, y):
"""
A counter for the `thop` package to count the operations in an
attention operation.
Meant to be used like:
macs, params = thop.profile(
model,
inputs=(inputs, timestamps),
custom_ops={QKVAttention: QKVAttention.count_flops},
)
"""
b, c, *spatial = y[0].shape
num_spatial = int(np.prod(spatial))
# We perform two matmuls with the same number of ops.
# The first computes the weight matrix, the second computes
# the combination of the value vectors.
matmul_ops = 2 * b * (num_spatial ** 2) * c
model.total_ops += th.DoubleTensor([matmul_ops])
class QKVAttentionLegacy(nn.Module):
"""
A module which performs QKV attention. Matches legacy QKVAttention + input/ouput heads shaping
"""
def __init__(self, n_heads):
super().__init__()
self.n_heads = n_heads
def forward(self, qkv):
"""
Apply QKV attention.
:param qkv: an [N x (H * 3 * C) x T] tensor of Qs, Ks, and Vs.
:return: an [N x (H * C) x T] tensor after attention.
"""
bs, width, length = qkv.shape
assert width % (3 * self.n_heads) == 0
ch = width // (3 * self.n_heads)
q, k, v = qkv.reshape(bs * self.n_heads, ch * 3, length).split(ch, dim=1)
scale = 1 / math.sqrt(math.sqrt(ch))
weight = th.einsum(
"bct,bcs->bts", q * scale, k * scale
) # More stable with f16 than dividing afterwards
weight = th.softmax(weight.float(), dim=-1).type(weight.dtype)
a = th.einsum("bts,bcs->bct", weight, v)
return a.reshape(bs, -1, length)
@staticmethod
def count_flops(model, _x, y):
return count_flops_attn(model, _x, y)
class AttentionBlock(nn.Module):
"""
An attention block that allows spatial positions to attend to each other.
Originally ported from here, but adapted to the N-d case.
https://github.com/hojonathanho/diffusion/blob/1e0dceb3b3495bbe19116a5e1b3596cd0706c543/diffusion_tf/models/unet.py#L66.
"""
def __init__(
self,
channels,
num_heads=1,
num_head_channels=-1,
use_checkpoint=False,
):
super().__init__()
self.channels = channels
if num_head_channels == -1:
self.num_heads = num_heads
else:
assert (
channels % num_head_channels == 0
), f"q,k,v channels {channels} is not divisible by num_head_channels {num_head_channels}"
self.num_heads = channels // num_head_channels
self.use_checkpoint = use_checkpoint
self.norm = Normalize(channels)
self.qkv = nn.Conv1d(channels, channels * 3, 1)
self.attention = QKVAttentionLegacy(self.num_heads)
self.proj_out = zero_module(nn.Conv1d(channels, channels, 1))
def forward(self, x):
return self._forward(x, )
def _forward(self, x):
b, c, *spatial = x.shape
x = x.reshape(b, c, -1)
qkv = self.qkv(self.norm(x))
h = self.attention(qkv)
h = self.proj_out(h)
return (x + h).reshape(b, c, *spatial)
class Downsample(nn.Module):
"""
A downsampling layer with an optional convolution.
:param channels: channels in the inputs and outputs.
:param use_conv: a bool determining if a convolution is applied.
"""
def __init__(self, channels, use_conv, out_channels=None, padding=1):
super().__init__()
self.channels = channels
self.out_channels = out_channels or channels
self.use_conv = use_conv
if use_conv:
self.op = nn.Conv3d(
self.channels, self.out_channels, 3, stride=2, padding=padding
)
else:
assert self.channels == self.out_channels
self.op = nn.AvgPool3d(kernel_size=2, stride=2)
def forward(self, x):
assert x.shape[1] == self.channels
return self.op(x)
class Upsample(nn.Module):
"""
An upsampling layer with an optional convolution.
:param channels: channels in the inputs and outputs.
:param use_conv: a bool determining if a convolution is applied.
"""
def __init__(self, channels, use_conv, out_channels=None, padding=1):
super().__init__()
self.channels = channels
self.out_channels = out_channels or channels
self.use_conv = use_conv
if use_conv:
self.conv = nn.Conv3d(self.channels, self.out_channels, 3, padding=padding)
def forward(self, x):
assert x.shape[1] == self.channels
x = F.interpolate(x, scale_factor=2, mode="nearest")
if self.use_conv:
x = self.conv(x)
return x
class ResBlock(TimestepBlock):
"""
A residual block that can optionally change the number of channels.
:param channels: the number of input channels.
:param emb_channels: the number of timestep embedding channels.
:param dropout: the rate of dropout.
:param out_channels: if specified, the number of out channels.
:param use_conv: if True and out_channels is specified, use a spatial
convolution instead of a smaller 1x1 convolution to change the
channels in the skip connection.
:param up: if True, use this block for upsampling.
:param down: if True, use this block for downsampling.
"""
def __init__(
self,
channels,
emb_channels,
dropout,
out_channels=None,
use_conv=False,
use_scale_shift_norm=False,
up=False,
down=False,
):
super().__init__()
self.channels = channels
self.emb_channels = emb_channels
self.dropout = dropout
self.out_channels = out_channels or channels
self.use_conv = use_conv
self.use_scale_shift_norm = use_scale_shift_norm
self.in_layers = nn.Sequential(
Normalize(channels),
nn.SiLU(),
nn.Conv3d(channels, self.out_channels, 3, padding=1),
)
self.updown = up or down
if up:
self.h_upd = Upsample(channels, False)
self.x_upd = Upsample(channels, False)
elif down:
self.h_upd = Downsample(channels, False)
self.x_upd = Downsample(channels, False)
else:
self.h_upd = self.x_upd = nn.Identity()
self.emb_layers = nn.Sequential(
nn.SiLU(),
nn.Linear(
emb_channels,
2 * self.out_channels if use_scale_shift_norm else self.out_channels,
),
)
self.out_layers = nn.Sequential(
Normalize(self.out_channels),
nn.SiLU(),
nn.Dropout(p=dropout),
zero_module(
nn.Conv3d(self.out_channels, self.out_channels, 3, padding=1)
),
)
if self.out_channels == channels:
self.skip_connection = nn.Identity()
elif use_conv:
self.skip_connection = nn.Conv3d(
channels, self.out_channels, 3, padding=1
)
else:
self.skip_connection = nn.Conv3d(channels, self.out_channels, 1)
def forward(self, x, emb):
return self._forward(x, emb)
def _forward(self, x, emb):
if self.updown:
in_rest, in_conv = self.in_layers[:-1], self.in_layers[-1]
h = in_rest(x)
h = self.h_upd(h)
x = self.x_upd(x)
h = in_conv(h)
else:
h = self.in_layers(x)
emb_out = self.emb_layers(emb).type(h.dtype)
while len(emb_out.shape) < len(h.shape):
emb_out = emb_out[..., None]
if self.use_scale_shift_norm:
out_norm, out_rest = self.out_layers[0], self.out_layers[1:]
scale, shift = th.chunk(emb_out, 2, dim=1)
h = out_norm(h) * (1 + scale) + shift
h = out_rest(h)
else:
h = h + emb_out
h = self.out_layers(h)
return self.skip_connection(x) + h
class UNetModel(nn.Module):
def __init__(
self,
image_size,
in_channels,
model_channels,
out_channels,
num_res_blocks,
attention_resolutions,
dropout=0,
channel_mult=(1, 2, 4, 8),
conv_resample=True,
num_classes=None,
num_heads=1,
num_head_channels=-1,
num_heads_upsample=-1,
use_scale_shift_norm=False,
resblock_updown=False,
use_spatial_transformer=False, # custom transformer support
transformer_depth=1, # custom transformer support
context_dim=None, # custom transformer support
n_embed=None # custom support for prediction of discrete ids into codebook of first stage vq model
):
super().__init__()
if use_spatial_transformer:
assert context_dim is not None, 'Fool!! You forgot to include the dimension of your cross-attention conditioning...'
if context_dim is not None:
assert use_spatial_transformer, 'Fool!! You forgot to use the spatial transformer for your cross-attention conditioning...'
if num_heads_upsample == -1:
num_heads_upsample = num_heads
self.image_size = image_size
self.in_channels = in_channels
self.model_channels = model_channels
self.out_channels = out_channels
self.num_res_blocks = num_res_blocks
self.attention_resolutions = attention_resolutions
self.dropout = dropout
self.channel_mult = channel_mult
self.conv_resample = conv_resample
self.num_classes = num_classes
self.num_heads = num_heads
self.num_head_channels = num_head_channels
self.num_heads_upsample = num_heads_upsample
self.predict_codebook_ids = n_embed is not None
time_embed_dim = model_channels * 4
self.time_embed = nn.Sequential(
nn.Linear(model_channels, time_embed_dim),
nn.SiLU(),
nn.Linear(time_embed_dim, time_embed_dim),
)
if self.num_classes is not None:
self.label_emb = nn.Embedding(num_classes, time_embed_dim)
self.input_blocks = nn.ModuleList(
[
TimestepEmbedSequential(
nn.Conv3d(in_channels, model_channels, 3, padding=1)
)
]
)
self._feature_size = model_channels
input_block_chans = [model_channels]
ch = model_channels
ds = 1
for level, mult in enumerate(channel_mult):
for _ in range(num_res_blocks):
layers = [
ResBlock(
ch,
time_embed_dim,
dropout,
out_channels=mult * model_channels,
use_scale_shift_norm=use_scale_shift_norm,
)
]
ch = mult * model_channels
if ds in attention_resolutions:
dim_head = ch // num_heads
layers.append(
AttentionBlock(
ch,
num_heads=num_heads,
num_head_channels=num_head_channels,
) if not use_spatial_transformer else SpatialTransformer(
ch, num_heads, dim_head, depth=transformer_depth, context_dim=context_dim
)
)
self.input_blocks.append(TimestepEmbedSequential(*layers))
self._feature_size += ch
input_block_chans.append(ch)
if level != len(channel_mult) - 1:
out_ch = ch
self.input_blocks.append(
TimestepEmbedSequential(
ResBlock(
ch,
time_embed_dim,
dropout,
out_channels=out_ch,
use_scale_shift_norm=use_scale_shift_norm,
down=True,
)
if resblock_updown
else Downsample(
ch, conv_resample, out_channels=out_ch
)
)
)
ch = out_ch
input_block_chans.append(ch)
ds *= 2
self._feature_size += ch
dim_head = ch // num_heads
self.middle_block = TimestepEmbedSequential(
ResBlock(
ch,
time_embed_dim,
dropout,
use_scale_shift_norm=use_scale_shift_norm,
),
AttentionBlock(
ch,
num_heads=num_heads,
num_head_channels=num_head_channels,
) if not use_spatial_transformer else SpatialTransformer(
ch, num_heads, dim_head, depth=transformer_depth, context_dim=context_dim
),
ResBlock(
ch,
time_embed_dim,
dropout,
use_scale_shift_norm=use_scale_shift_norm,
),
)
self._feature_size += ch
self.output_blocks = nn.ModuleList([])
for level, mult in list(enumerate(channel_mult))[::-1]:
for i in range(num_res_blocks + 1):
ich = input_block_chans.pop()
layers = [
ResBlock(
ch + ich,
time_embed_dim,
dropout,
out_channels=model_channels * mult,
use_scale_shift_norm=use_scale_shift_norm,
)
]
ch = model_channels * mult
if ds in attention_resolutions:
dim_head = ch // num_heads
layers.append(
AttentionBlock(
ch,
num_heads=num_heads_upsample,
num_head_channels=num_head_channels,
) if not use_spatial_transformer else SpatialTransformer(
ch, num_heads, dim_head, depth=transformer_depth, context_dim=context_dim
)
)
if level and i == num_res_blocks:
out_ch = ch
layers.append(
ResBlock(
ch,
time_embed_dim,
dropout,
out_channels=out_ch,
use_scale_shift_norm=use_scale_shift_norm,
up=True,
)
if resblock_updown
else Upsample(ch, conv_resample, out_channels=out_ch)
)
ds //= 2
self.output_blocks.append(TimestepEmbedSequential(*layers))
self._feature_size += ch
self.out = nn.Sequential(
Normalize(ch),
nn.SiLU(),
zero_module(nn.Conv3d(model_channels, out_channels, 3, padding=1)),
)
if self.predict_codebook_ids:
self.id_predictor = nn.Sequential(
Normalize(ch),
nn.Conv3d(model_channels, n_embed, 1),
)
def forward(self, x, timesteps=None, context=None, y=None, **kwargs):
"""
Apply the model to an input batch.
:param x: an [N x C x ...] Tensor of inputs.
:param timesteps: a 1-D batch of timesteps.
:param context: conditioning plugged in via crossattn
:param y: an [N] Tensor of labels, if class-conditional.
:return: an [N x C x ...] Tensor of outputs.
"""
assert (y is not None) == (
self.num_classes is not None
), "must specify y if and only if the model is class-conditional"
assert timesteps is not None, 'need to implement no-timestep usage'
hs = []
t_emb = timestep_embedding(timesteps, self.model_channels, repeat_only=False)
emb = self.time_embed(t_emb)
if self.num_classes is not None:
assert y.shape == (x.shape[0],)
emb = emb + self.label_emb(y)
h = x
for module in self.input_blocks:
h = module(h, emb, context)
hs.append(h)
h = self.middle_block(h, emb, context)
for module in self.output_blocks:
h = th.cat([h, hs.pop()], dim=1)
h = module(h, emb, context)
if self.predict_codebook_ids:
# return self.out(h), self.id_predictor(h)
return self.id_predictor(h)
else:
return self.out(h)