configs/configs_inference.py

# Copyright 2024 ByteDance and/or its affiliates.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

# pylint: disable=C0114
import os

from protenix.config.extend_types import ListValue, RequiredValue

code_directory = '/n/netscratch/mzitnik_lab/Lab/zzx/'
# The model will be download to the following dir if not exists:
# "./release_data/checkpoint/model_v0.2.0.pt"
inference_configs = {
    "seeds": ListValue([101]),
    "dump_dir": "./output",
    "need_atom_confidence": True,
    "sorted_by_ranking_score": True,
    "input_json_path": RequiredValue(str),
    "num_workers": 16,
    "use_msa": True,
}